##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002005_Nocton-Soy_GAGTGG_L002_R1_008.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 63 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.6857275 34.0 31.0 34.0 31.0 34.0 2 32.94039825 34.0 31.0 34.0 31.0 34.0 3 32.995374 34.0 31.0 34.0 31.0 34.0 4 36.40989425 37.0 37.0 37.0 35.0 37.0 5 36.336716 37.0 37.0 37.0 35.0 37.0 6 36.30990675 37.0 37.0 37.0 35.0 37.0 7 36.3112715 37.0 37.0 37.0 35.0 37.0 8 36.2906 37.0 37.0 37.0 35.0 37.0 9 38.07872775 39.0 39.0 39.0 37.0 39.0 10-14 38.334120150000004 39.4 38.4 39.4 35.8 39.4 15-19 39.47567845 41.0 39.8 41.0 36.6 41.0 20-24 39.217555950000005 40.8 39.0 41.0 35.8 41.0 25-29 38.590457949999994 40.0 38.2 41.0 34.6 41.0 30-34 37.3775512 39.6 35.8 41.0 32.0 41.0 35-39 36.68524695 38.2 35.0 40.4 31.8 41.0 40-44 35.74177295 36.0 35.0 39.6 31.0 41.0 45-49 35.070715899999996 35.0 35.0 38.0 31.2 40.8 50-54 34.21981890000001 35.0 34.6 35.8 30.8 39.4 55-59 33.40811935 35.0 33.8 35.0 29.2 37.2 60-64 33.09286745 35.0 33.0 35.0 28.4 35.6 65-69 32.721545400000004 35.0 33.0 35.0 28.2 35.0 70-74 32.38840765 35.0 33.0 35.0 26.6 35.0 75-79 31.88756035 34.4 32.6 35.0 26.4 35.0 80-84 32.05016489999999 35.0 33.0 35.0 27.0 35.0 85-89 31.1162112 35.0 32.2 35.0 21.4 35.0 90-94 30.97414205 35.0 31.8 35.0 23.4 35.0 95-99 30.5728113 35.0 31.6 35.0 20.2 35.0 100-101 29.137901499999998 34.0 29.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 42.0 3 18.0 4 56.0 5 134.0 6 426.0 7 1299.0 8 2861.0 9 4460.0 10 5437.0 11 6141.0 12 6344.0 13 6527.0 14 7228.0 15 7569.0 16 8306.0 17 9187.0 18 10167.0 19 10752.0 20 11721.0 21 13154.0 22 15493.0 23 18931.0 24 22759.0 25 28107.0 26 35041.0 27 42837.0 28 52811.0 29 65290.0 30 80697.0 31 102412.0 32 133465.0 33 190398.0 34 327728.0 35 785255.0 36 1341930.0 37 543558.0 38 92958.0 39 8484.0 40 17.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 35.714274999662486 18.735665173452965 16.83695536409397 28.71310446279058 2 32.3926 21.939600000000002 19.849775 25.818025 3 29.758625 19.68955 20.317574999999998 30.234250000000003 4 31.994925000000002 18.625575 18.938125 30.441374999999997 5 32.136025000000004 18.802725000000002 18.972125000000002 30.089125 6 31.340675 17.985075000000002 17.5396 33.13465 7 33.330275 17.92105 17.965249999999997 30.783424999999998 8 30.64865 18.502374999999997 18.811600000000002 32.037375000000004 9 31.4741 17.442525 18.418950000000002 32.664425 10-14 31.690615 18.339675 18.358079999999998 31.61163 15-19 31.801855 18.044925 18.216289999999997 31.936930000000004 20-24 31.734760142516237 18.117566747170784 18.261552092517846 31.886121017795126 25-29 32.0063568549868 18.17812724080063 18.135266870058427 31.680249034154144 30-34 32.36882116586271 17.960163355553544 17.950660353550706 31.720355125033034 35-39 31.8803784265591 18.063075461288083 18.143762019268642 31.912784092884174 40-44 32.042616736769894 18.07573669403434 18.054652965376928 31.82699360381884 45-49 32.079570000000004 17.913575 17.94812 32.058735 50-54 31.954042367829654 18.023557616490333 18.062412643688848 31.95998737199116 55-59 32.140575 18.08315 17.991965 31.784309999999998 60-64 32.099248254465635 17.887793892215065 17.925567209899622 32.08739064341968 65-69 31.99165730232573 18.015053419747964 18.04359149044437 31.949697787481934 70-74 32.11986 18.061185 17.97313 31.845825 75-79 32.134145 17.89332 17.887745 32.084790000000005 80-84 32.00037240072618 17.991725083863912 18.00913011780373 31.998772397606174 85-89 32.107935373264226 18.05016425500313 17.96104882787362 31.880851543859023 90-94 32.17227775515652 17.867260267108197 17.860153825211135 32.10030815252415 95-99 32.06604480990672 17.937107690566155 17.986622697993404 32.010224801533724 100-101 32.457562499999995 17.9952 17.871850000000002 31.675387500000003 >>END_MODULE >>Per base GC content warn #Base %GC 1 64.42737946245308 2 58.21062500000001 3 59.992875 4 62.4363 5 62.22515 6 64.47532500000001 7 64.1137 8 62.686025 9 64.138525 10-14 63.302245 15-19 63.738785 20-24 63.62088116031137 25-29 63.68660588914095 30-34 64.08917629089575 35-39 63.79316251944327 40-44 63.869610340588736 45-49 64.138305 50-54 63.91402973982082 55-59 63.924884999999996 60-64 64.18663889788532 65-69 63.94135508980766 70-74 63.96568500000001 75-79 64.218935 80-84 63.99914479833235 85-89 63.98878691712325 90-94 64.27258590768066 95-99 64.07626961144044 100-101 64.13295 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 6.0 1 5.0 2 2.0 3 0.5 4 4.5 5 5.0 6 2.0 7 4.0 8 6.5 9 6.5 10 12.0 11 17.0 12 23.5 13 30.0 14 37.5 15 53.0 16 76.5 17 103.0 18 132.0 19 170.5 20 232.0 21 307.5 22 378.0 23 488.5 24 625.0 25 822.0 26 1081.0 27 1338.0 28 1699.5 29 2152.5 30 2654.0 31 3286.0 32 3960.0 33 4741.5 34 5549.0 35 6355.5 36 7139.5 37 8039.0 38 9149.0 39 10143.5 40 10987.5 41 11968.0 42 13204.5 43 14465.0 44 15864.5 45 17559.5 46 19795.5 47 22597.5 48 25726.0 49 29914.0 50 35166.5 51 41122.0 52 47790.5 53 55386.5 54 64324.0 55 73756.0 56 83631.5 57 94924.0 58 106919.0 59 119844.5 60 133603.0 61 147771.5 62 161675.0 63 175406.0 64 188695.0 65 199616.5 66 207742.5 67 211559.5 68 211191.0 69 206976.0 70 197554.0 71 183180.5 72 164766.5 73 144660.0 74 123234.5 75 100571.5 76 79316.0 77 60534.0 78 44196.5 79 30589.0 80 20270.0 81 12809.5 82 7616.0 83 4324.5 84 2443.0 85 1394.0 86 850.5 87 538.5 88 348.5 89 248.5 90 176.0 91 123.5 92 95.5 93 60.0 94 32.0 95 22.0 96 14.5 97 9.0 98 3.5 99 0.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.00315 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.0071849999999999995 25-29 8.65E-4 30-34 0.084205 35-39 0.032915 40-44 0.017685 45-49 0.0 50-54 7.0E-5 55-59 0.0 60-64 0.02202 65-69 0.01076 70-74 0.0 75-79 0.0 80-84 1.95E-4 85-89 0.00609 90-94 0.02029 95-99 1.4999999999999999E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.18445388652835973 #Duplication Level Relative count 1 100.0 2 0.14923803466529115 3 0.008012780384713617 4 0.0015023963221338034 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0010015975480892022 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 249200 3.3086438 4.0146317 70-74 TTTTT 243455 3.2438471 3.7062893 95-97 GATCG 1277220 3.0832896 4.509067 1 CGATC 1258900 3.0652897 3.517245 1 ATCGA 708250 3.027375 3.6353555 2 TCGAT 704930 3.015321 3.374526 3 >>END_MODULE