##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002005_Nocton-Soy_GAGTGG_L002_R1_003.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 63 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.902237 34.0 31.0 34.0 31.0 34.0 2 33.11661575 34.0 33.0 34.0 31.0 34.0 3 33.151015 34.0 34.0 34.0 31.0 34.0 4 36.50425025 37.0 37.0 37.0 35.0 37.0 5 36.446544 37.0 37.0 37.0 35.0 37.0 6 36.415626 37.0 37.0 37.0 35.0 37.0 7 36.40510925 37.0 37.0 37.0 35.0 37.0 8 36.39024925 37.0 37.0 37.0 35.0 37.0 9 38.19512875 39.0 39.0 39.0 37.0 39.0 10-14 38.46439265 39.4 39.2 39.4 37.0 39.4 15-19 39.611459100000005 41.0 40.0 41.0 37.0 41.0 20-24 39.35444905 41.0 39.2 41.0 36.4 41.0 25-29 38.8336456 40.0 38.4 41.0 35.0 41.0 30-34 37.9774203 39.8 36.8 41.0 33.4 41.0 35-39 36.8350141 38.2 35.0 40.4 32.6 41.0 40-44 35.90558375 36.2 35.0 39.8 31.8 41.0 45-49 35.22519225 35.0 35.0 38.0 31.8 40.8 50-54 34.3698289 35.0 34.8 35.8 31.0 39.4 55-59 33.7316396 35.0 34.0 35.0 30.2 37.4 60-64 33.27990855 35.0 33.6 35.0 29.8 35.6 65-69 32.902193200000006 35.0 33.0 35.0 29.0 35.0 70-74 32.621050849999996 35.0 33.0 35.0 28.6 35.0 75-79 31.915231499999997 34.4 32.4 35.0 26.4 35.0 80-84 32.179539 35.0 33.0 35.0 27.0 35.0 85-89 31.8227644 35.0 33.0 35.0 26.2 35.0 90-94 31.35950515 35.0 33.0 35.0 24.2 35.0 95-99 30.737349900000005 35.0 31.8 35.0 22.0 35.0 100-101 29.284262249999998 34.0 29.0 35.0 8.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 38.0 3 27.0 4 47.0 5 121.0 6 361.0 7 1077.0 8 2397.0 9 3847.0 10 4838.0 11 5357.0 12 5660.0 13 5775.0 14 6331.0 15 6642.0 16 7588.0 17 8327.0 18 8900.0 19 9512.0 20 10482.0 21 11780.0 22 13758.0 23 16326.0 24 20234.0 25 25491.0 26 31083.0 27 38764.0 28 47735.0 29 58403.0 30 73191.0 31 93534.0 32 123116.0 33 175200.0 34 295743.0 35 752098.0 36 1429482.0 37 596081.0 38 101256.0 39 9370.0 40 28.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 35.66144258005665 18.71469265607246 16.79344303615152 28.83042172771936 2 32.4652 21.8703 19.825300000000002 25.8392 3 29.777749999999997 19.61635 20.275199999999998 30.3307 4 32.006675 18.573025 18.85145 30.568849999999998 5 32.16285 18.813225 18.907725 30.1162 6 31.335075 17.975125 17.554525 33.135275 7 33.34685 17.95285 17.95445 30.74585 8 30.651625 18.544649999999997 18.75075 32.052975 9 31.4309 17.473975 18.421525 32.6736 10-14 31.704943170494314 18.32656683265668 18.352696835269683 31.615793161579315 15-19 31.811885 18.02425 18.202295 31.961570000000002 20-24 31.723790620463905 18.093241760607146 18.254211865237714 31.92875575369124 25-29 31.888903694884924 18.160210266255422 18.164300387936542 31.786585650923115 30-34 32.002763871832194 17.983964640052474 18.016086394510683 31.997185093604646 35-39 31.88786592624217 18.063287480964583 18.10844088627098 31.940405706522267 40-44 32.01818652462946 18.07286260059742 18.052847243323296 31.856103631449823 45-49 32.083525 17.908855000000003 17.928705 32.078915 50-54 31.923093134713465 18.009448957166192 18.054444229387588 32.013013678732754 55-59 32.05072 18.033225 17.9973 31.918754999999997 60-64 32.10457506795043 17.862974467082946 17.910171051484586 32.12227941348204 65-69 31.962971626360776 17.989008198714053 18.031559430111578 32.0164607448136 70-74 32.08698 18.02317 17.96489 31.924960000000002 75-79 32.144615 17.873530000000002 17.878420000000002 32.103435000000005 80-84 31.997275655201072 17.962549709517063 18.01692259943616 32.02325203584571 85-89 32.12019999658927 17.991631317889144 17.938555015290504 31.949613670231074 90-94 32.20296323757949 17.821000315012427 17.841102489478494 32.13493395792958 95-99 32.10396136025203 17.89406592797737 17.943791265992402 32.0581814457782 100-101 32.41154135820024 17.95491832735932 17.82379209805092 31.809748216389526 >>END_MODULE >>Per base GC content warn #Base %GC 1 64.49186430777601 2 58.3044 3 60.108450000000005 4 62.575525 5 62.279050000000005 6 64.47035 7 64.09270000000001 8 62.7046 9 64.1045 10-14 63.320736332073636 15-19 63.773455 20-24 63.652546374155136 25-29 63.67548934580803 30-34 63.999948965436836 35-39 63.82827163276444 40-44 63.87429015607928 45-49 64.16244 50-54 63.93610681344622 55-59 63.969474999999996 60-64 64.22685448143247 65-69 63.97943237117437 70-74 64.01194 75-79 64.24805 80-84 64.02052769104678 85-89 64.06981366682035 90-94 64.33789719550907 95-99 64.16214280603023 100-101 64.22128957458976 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 6.0 1 5.0 2 3.0 3 2.5 4 2.0 5 4.0 6 5.0 7 3.0 8 7.0 9 8.5 10 14.5 11 21.5 12 24.5 13 36.5 14 50.5 15 65.5 16 85.0 17 95.5 18 120.0 19 164.5 20 212.0 21 290.0 22 382.5 23 499.0 24 644.5 25 857.0 26 1113.5 27 1374.0 28 1719.0 29 2164.5 30 2691.5 31 3249.5 32 3883.5 33 4652.0 34 5399.5 35 6095.5 36 6957.0 37 7945.0 38 8950.5 39 9874.5 40 10810.5 41 11873.0 42 12933.0 43 14145.5 44 15658.5 45 17467.5 46 19783.5 47 22629.5 48 25855.0 49 29914.5 50 34896.0 51 40926.5 52 47901.5 53 55534.0 54 63936.5 55 73316.5 56 83924.0 57 94958.0 58 106878.0 59 119927.0 60 133234.0 61 147220.5 62 161595.5 63 175414.5 64 188281.5 65 199468.5 66 207571.5 67 211763.0 68 211713.0 69 207092.0 70 197673.0 71 183412.5 72 165085.0 73 144760.5 74 123105.5 75 100771.5 76 79858.5 77 60867.5 78 44453.5 79 30972.5 80 20463.5 81 12930.0 82 7826.0 83 4541.0 84 2575.5 85 1509.0 86 901.0 87 606.5 88 427.5 89 305.0 90 217.5 91 151.0 92 100.5 93 75.5 94 50.0 95 28.5 96 19.5 97 10.5 98 3.0 99 0.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0208 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 9.999999999999999E-6 15-19 0.0 20-24 6.500000000000001E-5 25-29 0.002975 30-34 0.06772500000000001 35-39 0.018615 40-44 0.0017850000000000001 45-49 0.0 50-54 6.05E-4 55-59 0.0 60-64 0.024544999999999997 65-69 0.026395 70-74 0.0 75-79 0.0 80-84 0.005314999999999999 85-89 0.021295 90-94 0.03569 95-99 0.010735 100-101 9.375E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.19293343796390108 #Duplication Level Relative count 1 100.0 2 0.15123971494819288 3 0.005007937581065989 4 5.00793758106599E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.002003175032426396 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 242600 3.2272403 4.0903068 1 TTTTT 237305 3.1647596 3.555242 10-14 GATCG 1279825 3.0948837 4.4237604 1 CGATC 1263625 3.0720305 3.4585814 6 ATCGA 710320 3.0381374 3.737135 2 TCGAT 707080 3.0258029 3.4464524 5 >>END_MODULE