##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002005_Nocton-Soy_GAGTGG_L002_R1_002.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 63 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.82595075 34.0 31.0 34.0 31.0 34.0 2 33.06775925 34.0 31.0 34.0 31.0 34.0 3 33.10394725 34.0 33.0 34.0 31.0 34.0 4 36.4622705 37.0 37.0 37.0 35.0 37.0 5 36.3931445 37.0 37.0 37.0 35.0 37.0 6 36.35973725 37.0 37.0 37.0 35.0 37.0 7 36.35641175 37.0 37.0 37.0 35.0 37.0 8 36.33966625 37.0 37.0 37.0 35.0 37.0 9 38.138427 39.0 39.0 39.0 37.0 39.0 10-14 38.3999551 39.4 38.8 39.4 37.0 39.4 15-19 39.535457550000004 41.0 40.0 41.0 37.0 41.0 20-24 39.2763956 40.8 39.0 41.0 35.8 41.0 25-29 38.741991 40.0 38.2 41.0 34.8 41.0 30-34 37.8928536 39.8 36.8 41.0 33.2 41.0 35-39 36.76962905 38.2 35.0 40.4 32.2 41.0 40-44 35.829052950000005 36.2 35.0 39.8 31.4 41.0 45-49 35.111027050000004 35.0 35.0 38.0 31.4 40.8 50-54 34.23214535 35.0 34.4 35.8 30.6 39.4 55-59 33.59872614999999 35.0 34.0 35.0 30.0 37.4 60-64 33.13142225 35.0 33.2 35.0 28.6 35.6 65-69 32.71315705 35.0 33.0 35.0 28.4 35.0 70-74 32.41211695 35.0 33.0 35.0 26.8 35.0 75-79 31.67012305 34.4 32.2 35.0 26.0 35.0 80-84 31.977838050000003 35.0 33.0 35.0 26.6 35.0 85-89 31.58255005 35.0 33.0 35.0 24.4 35.0 90-94 31.0797205 35.0 32.6 35.0 23.6 35.0 95-99 30.4223885 35.0 31.4 35.0 18.6 35.0 100-101 29.060439625 33.5 29.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 29.0 3 18.0 4 47.0 5 148.0 6 429.0 7 1198.0 8 2673.0 9 4262.0 10 5292.0 11 5984.0 12 6277.0 13 6669.0 14 7174.0 15 7591.0 16 8519.0 17 9235.0 18 10364.0 19 10819.0 20 11837.0 21 13093.0 22 15238.0 23 17852.0 24 22240.0 25 27767.0 26 34059.0 27 41724.0 28 51162.0 29 63140.0 30 78504.0 31 99838.0 32 131483.0 33 183291.0 34 303789.0 35 735603.0 36 1379018.0 37 590925.0 38 103061.0 39 9631.0 40 17.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 35.63325710985058 18.76743002671781 16.834545865990865 28.764766997440745 2 32.464025 21.891425 19.84735 25.797199999999997 3 29.7393 19.676099999999998 20.315525 30.269075 4 31.933650000000004 18.62855 18.946425 30.491374999999998 5 32.1199 18.86265 18.926775000000003 30.090675 6 31.28625 18.032500000000002 17.5594 33.12185 7 33.3144 17.950325 17.965600000000002 30.769675000000003 8 30.629725 18.554825 18.797449999999998 32.018 9 31.430225 17.481775 18.462725 32.625274999999995 10-14 31.695769730693407 18.3468953631698 18.36023539251786 31.597099513618932 15-19 31.785225 18.061854999999998 18.21604 31.936880000000002 20-24 31.719780344231772 18.11269580720125 18.279142147094284 31.888381701472696 25-29 31.88069158242054 18.182563638972738 18.18628365199278 31.750461126613942 30-34 31.973887056144417 17.976979315245174 18.059156378523614 31.989977250086792 35-39 31.870694587756077 18.066411651143007 18.151613519763306 31.911280241337618 40-44 31.980400640265216 18.090132434579342 18.073957302752017 31.85550962240342 45-49 32.06565 17.92348 17.961285 32.049585 50-54 31.940230117936032 18.008101273772322 18.073547677597684 31.978120930693965 55-59 32.03141 18.04391 18.035275000000002 31.889405 60-64 32.10425042136556 17.90776644845938 17.91782801403898 32.07015511613607 65-69 31.964834506676688 17.991381412504953 18.029354288079347 32.014429792739016 70-74 32.08711 18.042965 17.961759999999998 31.908165 75-79 32.141355 17.876269999999998 17.88724 32.095135 80-84 32.01311402226036 17.955126970774764 18.011454643522836 32.020304363442044 85-89 32.129962454668565 17.9866791084334 17.943267944048056 31.940090492849986 90-94 32.218366527560256 17.830980207093248 17.840122381102226 32.11053088424428 95-99 32.11594986722554 17.901261359934963 17.942424294852223 32.04036447798728 100-101 32.469423227284686 17.934735801308634 17.81259746160755 31.78324350979913 >>END_MODULE >>Per base GC content warn #Base %GC 1 64.39802410729133 2 58.261225 3 60.008375 4 62.425025 5 62.210575 6 64.4081 7 64.084075 8 62.647725 9 64.0555 10-14 63.292869244312335 15-19 63.722105 20-24 63.60816204570446 25-29 63.63115270903448 30-34 63.96386430623121 35-39 63.78197482909369 40-44 63.83591026266864 45-49 64.115235 50-54 63.918351048629994 55-59 63.920815 60-64 64.17440553750163 65-69 63.979264299415696 70-74 63.99527499999999 75-79 64.23649 80-84 64.0334183857024 85-89 64.07005294751855 90-94 64.32889741180453 95-99 64.15631434521282 100-101 64.25266673708381 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5.0 1 3.0 2 1.0 3 2.5 4 2.5 5 4.5 6 7.0 7 5.5 8 5.0 9 7.0 10 11.0 11 16.0 12 24.0 13 31.0 14 43.0 15 55.5 16 64.5 17 92.0 18 124.5 19 147.0 20 188.5 21 270.5 22 362.0 23 473.0 24 642.0 25 850.5 26 1066.5 27 1376.5 28 1813.0 29 2229.0 30 2645.5 31 3231.0 32 3917.0 33 4695.5 34 5575.0 35 6362.5 36 7229.0 37 8140.0 38 9022.0 39 9913.5 40 10856.5 41 11897.5 42 12969.0 43 14184.0 44 15739.0 45 17638.0 46 19864.0 47 22769.5 48 26215.0 49 30245.5 50 35252.5 51 41039.5 52 47878.5 53 55887.0 54 64273.0 55 73643.0 56 83805.5 57 94689.0 58 106738.5 59 119957.0 60 133725.5 61 147625.0 62 162152.5 63 176424.5 64 188959.0 65 199669.0 66 208002.5 67 211779.5 68 211187.5 69 206200.0 70 196456.5 71 182726.5 72 164928.5 73 143947.0 74 122087.0 75 100082.5 76 79150.0 77 60193.5 78 43850.5 79 30751.0 80 20508.5 81 13030.0 82 7918.0 83 4721.5 84 2766.0 85 1659.5 86 1047.5 87 682.0 88 486.0 89 347.5 90 247.0 91 184.5 92 116.0 93 84.5 94 55.0 95 25.0 96 15.5 97 10.0 98 4.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.019875 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 2.2E-4 15-19 0.0 20-24 8.049999999999999E-4 25-29 3.5E-4 30-34 0.063355 35-39 0.01393 40-44 8.15E-4 45-49 0.0 50-54 0.0021449999999999998 55-59 0.0 60-64 0.01556 65-69 0.02074 70-74 0.0 75-79 0.0 80-84 0.004745 85-89 0.0142 90-94 0.02378 95-99 0.00713 100-101 6.875000000000001E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.17546753850537353 #Duplication Level Relative count 1 100.0 2 0.15023587031639674 3 0.003004717406327935 4 0.0015023587031639675 5 0.0010015724687759784 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0015023587031639675 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 239385 3.1952634 4.0653467 1 TTTTT 237500 3.1523325 3.4430783 90-94 GATCG 1280555 3.095388 4.4829407 1 CGATC 1262975 3.0712602 3.4449396 1 ATCGA 713015 3.0513034 3.8056803 2 TCGAT 705675 3.0164993 3.347474 5 >>END_MODULE