##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002005_Nocton-Soy_GAGTGG_L002_R1_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 63 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.7268995 34.0 31.0 34.0 31.0 34.0 2 32.9669215 34.0 31.0 34.0 31.0 34.0 3 32.99702075 34.0 31.0 34.0 31.0 34.0 4 36.39913875 37.0 37.0 37.0 35.0 37.0 5 36.33507725 37.0 37.0 37.0 35.0 37.0 6 36.29158325 37.0 37.0 37.0 35.0 37.0 7 36.2771075 37.0 37.0 37.0 35.0 37.0 8 36.27069675 37.0 37.0 37.0 35.0 37.0 9 38.055138 39.0 38.0 39.0 35.0 39.0 10-14 38.3106861 39.4 38.4 39.4 35.4 39.4 15-19 39.435456249999994 41.0 39.4 41.0 36.4 41.0 20-24 39.183138 40.6 39.0 41.0 35.6 41.0 25-29 38.67262355 40.0 38.0 41.0 34.8 41.0 30-34 37.81534899999999 39.8 36.4 41.0 33.2 41.0 35-39 36.69965165 38.2 35.0 40.4 32.0 41.0 40-44 35.76997375 36.0 35.0 39.6 31.0 41.0 45-49 35.022234250000004 35.0 35.0 38.0 31.0 40.8 50-54 34.1725359 35.0 34.2 35.8 30.4 39.4 55-59 33.552817749999996 35.0 33.8 35.0 29.8 37.4 60-64 33.06778919999999 35.0 33.0 35.0 28.0 35.6 65-69 32.689163349999994 35.0 33.0 35.0 28.2 35.0 70-74 32.401658499999996 35.0 33.0 35.0 26.6 35.0 75-79 31.65177225 34.4 32.2 35.0 26.0 35.0 80-84 31.93241155 35.0 33.0 35.0 26.6 35.0 85-89 31.556455449999998 35.0 33.0 35.0 24.2 35.0 90-94 31.116119199999996 35.0 32.6 35.0 23.6 35.0 95-99 30.498083349999995 35.0 31.6 35.0 18.8 35.0 100-101 29.271623499999997 34.0 30.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 45.0 3 15.0 4 47.0 5 135.0 6 445.0 7 1233.0 8 2863.0 9 4547.0 10 5690.0 11 6185.0 12 6357.0 13 6867.0 14 7319.0 15 7670.0 16 8490.0 17 9725.0 18 10363.0 19 11200.0 20 11944.0 21 13544.0 22 15604.0 23 18867.0 24 23052.0 25 28630.0 26 35309.0 27 43579.0 28 53724.0 29 65840.0 30 81713.0 31 103894.0 32 134965.0 33 186705.0 34 300245.0 35 706370.0 36 1366254.0 37 604243.0 38 105488.0 39 10799.0 40 35.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 35.54453754061198 18.795606790269982 16.86659261106527 28.79326305805277 2 32.403749999999995 21.95825 19.84365 25.794349999999998 3 29.764325000000003 19.734925 20.3019 30.19885 4 31.944875 18.608475 18.939225 30.507424999999998 5 32.117050000000006 18.8544 18.965874999999997 30.062675 6 31.284075 18.0273 17.585525 33.103100000000005 7 33.271975 17.9645 17.9621 30.801425 8 30.6328 18.559925 18.814975 31.9923 9 31.4407 17.5111 18.411075 32.637125 10-14 31.678476867582916 18.3589482409499 18.38386331320361 31.57871157826358 15-19 31.769550000000002 18.07931 18.226895000000003 31.924245000000003 20-24 31.71773911610422 18.123359485563473 18.274100812087145 31.88480058624516 25-29 31.862180000000002 18.190465 18.188814999999998 31.758540000000004 30-34 31.984530985593 18.003425421803325 18.049804256609747 31.962239335993925 35-39 31.849216433799242 18.094585969871808 18.138988021246583 31.917209575082367 40-44 31.987139999999997 18.088115 18.08186 31.842885 45-49 32.062515000000005 17.922625 17.95599 32.05887 50-54 31.92461509138186 18.017619365622036 18.079129943821474 31.97863559917463 55-59 32.03405 18.05236 18.018925 31.894665 60-64 32.0999751114372 17.89235629080303 17.93332715578235 32.07434144197742 65-69 31.956776762453927 18.00079073972371 18.05306497658136 31.989367521241004 70-74 32.071495 18.048235000000002 17.979385 31.900885000000002 75-79 32.127795 17.88065 17.90306 32.088495 80-84 31.993807317923334 17.98899439869486 18.028481197318538 31.988717086063268 85-89 32.13677673812529 18.00730131485475 17.961460571009546 31.894461376010412 90-94 32.20494075942738 17.83662573764091 17.87175834209315 32.08667516083856 95-99 32.101018500623674 17.918540451628534 17.950417818523025 32.03002322922477 100-101 32.3960132176074 17.97688356217894 17.82763234951284 31.799470870700823 >>END_MODULE >>Per base GC content warn #Base %GC 1 64.33780059866476 2 58.1981 3 59.963175 4 62.45230000000001 5 62.179725 6 64.387175 7 64.0734 8 62.6251 9 64.077825 10-14 63.25718844584649 15-19 63.693794999999994 20-24 63.60253970234938 25-29 63.62072 30-34 63.94677032158693 35-39 63.7664260088816 40-44 63.830025 45-49 64.121385 50-54 63.90325069055649 55-59 63.928715000000004 60-64 64.17431655341463 65-69 63.94614428369493 70-74 63.972379999999994 75-79 64.21629 80-84 63.98252440398661 85-89 64.0312381141357 90-94 64.29161592026594 95-99 64.13104172984843 100-101 64.19548408830822 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4.0 1 3.0 2 3.0 3 3.0 4 2.5 5 3.5 6 5.5 7 6.0 8 7.0 9 8.5 10 10.5 11 18.5 12 25.0 13 33.5 14 47.5 15 67.0 16 87.5 17 104.5 18 142.0 19 177.5 20 224.5 21 294.5 22 379.5 23 487.0 24 648.5 25 888.0 26 1116.0 27 1369.5 28 1708.0 29 2176.0 30 2679.0 31 3259.5 32 4024.0 33 4802.0 34 5554.5 35 6362.5 36 7196.5 37 8152.0 38 9088.0 39 9928.0 40 10958.5 41 12088.0 42 13166.5 43 14362.0 44 15837.5 45 17759.0 46 20082.0 47 22721.0 48 26087.5 49 30244.5 50 35261.5 51 41130.0 52 47731.0 53 55485.0 54 64353.5 55 73747.5 56 83609.5 57 94644.0 58 106815.5 59 119971.0 60 133857.0 61 148070.5 62 162469.0 63 176252.5 64 188965.0 65 199794.5 66 207849.0 67 212173.5 68 211742.0 69 206423.5 70 196681.5 71 182411.0 72 164403.0 73 143918.5 74 121953.0 75 100046.0 76 79178.5 77 60190.5 78 43603.5 79 30319.0 80 20282.5 81 12869.0 82 7832.0 83 4549.5 84 2598.5 85 1541.5 86 947.5 87 608.5 88 422.0 89 295.5 90 206.5 91 148.5 92 100.0 93 55.0 94 38.0 95 28.0 96 14.0 97 8.0 98 2.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.052575 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 2.9E-4 15-19 0.0 20-24 8.8E-4 25-29 0.0 30-34 0.02983 35-39 0.00462 40-44 0.0 45-49 0.0 50-54 9.4E-4 55-59 0.0 60-64 0.014315000000000001 65-69 0.01767 70-74 0.0 75-79 0.0 80-84 0.004555 85-89 0.012530000000000001 90-94 0.021645 95-99 0.007425 100-101 8.125E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.1974545854453463 #Duplication Level Relative count 1 100.0 2 0.16078056208083105 3 0.009015732453130714 4 0.0025043701258696425 5 5.008740251739285E-4 6 5.008740251739285E-4 7 0.0 8 5.008740251739285E-4 9 0.0 10++ 0.001001748050347857 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 237145 3.157431 3.8371456 1 TTTTT 236385 3.1332753 3.48126 10-14 GATCG 1278515 3.0898926 4.3654857 1 CGATC 1260755 3.0653129 3.5636644 1 ATCGA 709750 3.0346587 3.7009974 2 TCGAT 705670 3.0145175 3.3848882 5 >>END_MODULE