##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L003_R2_010.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 405015 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.12481759934817 33.0 31.0 34.0 30.0 34.0 2 32.31638334382677 34.0 31.0 34.0 30.0 34.0 3 32.3617964766737 34.0 31.0 34.0 30.0 34.0 4 35.83369998642026 37.0 35.0 37.0 35.0 37.0 5 35.8507981185882 37.0 35.0 37.0 35.0 37.0 6 35.77866251867215 37.0 35.0 37.0 35.0 37.0 7 35.79608656469514 37.0 35.0 37.0 35.0 37.0 8 35.72721504141822 37.0 35.0 37.0 35.0 37.0 9 37.46635309803341 39.0 38.0 39.0 35.0 39.0 10-14 37.66725380541462 39.2 37.8 39.4 34.8 39.4 15-19 38.65251114156266 40.0 38.0 41.0 34.4 41.0 20-24 38.38687456020148 40.0 38.0 41.0 33.8 41.0 25-29 37.95452514104416 40.0 37.8 41.0 33.0 41.0 30-34 37.27856696665555 39.6 36.2 41.0 32.0 41.0 35-39 36.28992062022395 38.2 35.0 40.2 30.6 41.0 40-44 35.43445847684654 36.4 34.8 39.8 29.8 41.0 45-49 34.55183240126909 35.0 34.0 38.4 28.8 40.8 50-54 33.25939335580164 34.8 32.6 36.0 26.6 39.2 55-59 33.35007049121638 35.0 33.0 35.0 27.0 38.8 60-64 33.05101736972705 35.0 33.0 35.0 27.0 36.8 65-69 32.75816994432305 35.0 33.0 35.0 26.8 35.6 70-74 32.40395689048553 35.0 33.0 35.0 26.0 35.0 75-79 32.11262397688974 35.0 33.0 35.0 26.4 35.0 80-84 31.799922965816087 35.0 33.0 35.0 24.6 35.0 85-89 31.444365270422082 35.0 32.6 35.0 24.0 35.0 90-94 31.024905744231695 35.0 31.8 35.0 23.4 35.0 95-99 30.287569596187797 34.4 31.0 35.0 17.8 35.0 100-101 28.814456254706617 33.5 29.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 706.0 3 208.0 4 215.0 5 295.0 6 404.0 7 509.0 8 622.0 9 684.0 10 733.0 11 730.0 12 780.0 13 711.0 14 722.0 15 675.0 16 816.0 17 851.0 18 934.0 19 1136.0 20 1332.0 21 1634.0 22 1917.0 23 2241.0 24 2901.0 25 3385.0 26 4180.0 27 5013.0 28 6187.0 29 7656.0 30 9033.0 31 11524.0 32 14591.0 33 19890.0 34 31435.0 35 70038.0 36 123206.0 37 58119.0 38 16213.0 39 2781.0 40 8.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.691071468264454 23.026330413220283 18.944511265939397 27.338086852575866 2 30.642870726894174 23.690313593669345 22.128149335493607 23.538666343942875 3 29.4277310031934 21.62945144073678 21.05794807074392 27.884869485325897 4 31.151905518111743 20.609874463760455 19.420700760429042 28.81751925769876 5 30.721552745950216 19.80170881074674 19.503654681943896 29.97308376135915 6 30.119131390195424 19.107934274039234 18.24895374245398 32.52398059331136 7 31.95883927953919 18.90616817997688 19.204301818936305 29.930690721547627 8 29.79130744109524 19.264042529013896 19.750942426742686 31.193707603148173 9 30.477472914376076 18.32408860118349 19.42604420176165 31.77239428267879 10-14 30.53576808902631 19.29975254004554 19.399230453874157 30.765248917053995 15-19 30.648124914795797 19.17237822960977 19.298184088497777 30.88131276709666 20-24 30.61238398226881 19.23239893604938 19.289685545896944 30.865531535784875 25-29 30.739397614935616 19.25425623910105 19.226698655851713 30.779647490111618 30-34 30.874392916465602 19.162428462555546 19.065423515006874 30.89775510597198 35-39 30.661749708246965 19.255502563426344 19.208585021253647 30.874162707073044 40-44 30.779756599203477 19.266933490695315 19.152516845221488 30.800793064879716 45-49 30.816618387641885 19.085309184932203 19.10308666422391 30.994985763202 50-54 30.700261990187094 19.204991888428232 19.23037604604706 30.86437007533761 55-59 30.840141723146058 19.21252299297557 19.188573262718663 30.758762021159708 60-64 30.809673715788303 19.193560732318556 19.11257607742923 30.88418947446391 65-69 30.731849437675145 19.267286396800117 19.181511795859414 30.81935236966532 70-74 30.776193474315765 19.293310124316385 19.229164351937584 30.70133204943027 75-79 30.8461168104885 19.20644914385887 19.127390343567523 30.82004370208511 80-84 30.713134081453774 19.277211955112776 19.260422453489376 30.749231509944075 85-89 30.74567608607089 19.31676604570201 19.2613606903448 30.6761971778823 90-94 30.851252422749774 19.25518807945385 19.123242349048798 30.770317148747576 95-99 30.722713973556537 19.292865696332235 19.26684196881597 30.71757836129526 100-101 30.83466044467489 19.347308124390455 19.202375220670838 30.61565621026382 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.029158320840324 2 54.18153707083705 3 57.31260048851931 4 59.969424775810495 5 60.69463650730936 6 62.643111983506785 7 61.88953000108681 8 60.98501504424342 9 62.24986719705486 10-14 61.30101700608031 15-19 61.52943768189245 20-24 61.477915518053685 25-29 61.51904510504723 30-34 61.77214802243758 35-39 61.535912415320006 40-44 61.58054966408319 45-49 61.81160415084389 50-54 61.564632065524705 55-59 61.598903744305765 60-64 61.693863190252216 65-69 61.55120180734047 70-74 61.47752552374604 75-79 61.66616051257361 80-84 61.46236559139785 85-89 61.42187326395319 90-94 61.621569571497346 95-99 61.4402923348518 100-101 61.45031665493871 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 12.0 1 9.0 2 4.5 3 6.0 4 5.0 5 3.0 6 3.0 7 1.5 8 4.0 9 7.0 10 8.0 11 10.5 12 12.5 13 17.0 14 21.0 15 26.0 16 34.5 17 36.5 18 56.0 19 73.5 20 85.0 21 114.0 22 140.0 23 165.0 24 214.5 25 293.0 26 373.5 27 460.5 28 562.5 29 675.5 30 810.0 31 944.5 32 1086.0 33 1231.5 34 1398.0 35 1520.5 36 1644.0 37 1791.0 38 1910.0 39 2002.5 40 2091.0 41 2232.5 42 2289.5 43 2431.0 44 2589.5 45 2705.0 46 2928.0 47 3236.5 48 3620.5 49 4053.5 50 4585.5 51 5199.0 52 6007.5 53 6875.0 54 7767.0 55 8712.5 56 9674.5 57 10804.0 58 11939.5 59 13080.5 60 14417.0 61 15781.5 62 17108.0 63 18320.0 64 19202.5 65 19725.0 66 19976.5 67 20168.5 68 19786.5 69 18863.0 70 17591.0 71 15826.5 72 13840.0 73 11735.0 74 9541.0 75 7321.5 76 5460.0 77 3929.5 78 2542.0 79 1514.5 80 845.5 81 429.0 82 219.5 83 101.5 84 51.0 85 34.0 86 27.5 87 21.5 88 12.0 89 6.5 90 8.0 91 5.5 92 4.0 93 3.5 94 3.0 95 2.0 96 1.0 97 0.5 98 0.5 99 0.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03012234114785872 2 0.031603767761687836 3 0.029134723405305978 4 0.027653296791476857 5 0.013579743960100244 6 0.0 7 0.04024542300902436 8 0.05160302704838093 9 0.06913324197869215 10-14 0.02493734799945681 15-19 0.026023727516264826 20-24 0.008345369924570696 25-29 0.011061318716590744 30-34 0.02153006678764984 35-39 0.012147698233398764 40-44 9.876177425527449E-4 45-49 0.002024616372233127 50-54 0.009382368554251076 55-59 0.0 60-64 0.0 65-69 0.0 70-74 0.0 75-79 0.0 80-84 0.0 85-89 0.0 90-94 0.0 95-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 405015.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.09296235024813429 #Duplication Level Relative count 1 100.0 2 0.04902573851271918 3 0.0015007879136546688 4 5.002626378848896E-4 5 0.0 6 0.0 7 5.002626378848896E-4 8 0.0 9 0.0 10++ 0.0010005252757697791 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 38330 3.5978763 4.9174924 1 TTTTT 36500 3.5085254 4.139213 75-79 >>END_MODULE