##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L003_R2_009.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.434848 34.0 31.0 34.0 31.0 34.0 2 32.5963115 34.0 31.0 34.0 31.0 34.0 3 32.63935425 34.0 31.0 34.0 31.0 34.0 4 36.0454775 37.0 37.0 37.0 35.0 37.0 5 36.04087375 37.0 37.0 37.0 35.0 37.0 6 36.0459465 37.0 37.0 37.0 35.0 37.0 7 36.03033925 37.0 37.0 37.0 35.0 37.0 8 35.989181 37.0 37.0 37.0 35.0 37.0 9 37.72274625 39.0 38.0 39.0 35.0 39.0 10-14 37.9888377 39.4 38.2 39.4 35.2 39.4 15-19 39.0849841 41.0 39.0 41.0 36.0 41.0 20-24 38.83971525 40.8 39.0 41.0 35.0 41.0 25-29 38.4572052 40.0 38.0 41.0 34.4 41.0 30-34 37.81238165 40.0 37.0 41.0 33.2 41.0 35-39 36.833002500000006 38.6 35.0 40.6 32.0 41.0 40-44 35.94219645 36.6 35.0 40.0 31.0 41.0 45-49 35.0165344 35.0 34.8 38.8 30.4 41.0 50-54 33.7519005 35.0 33.2 36.2 28.4 39.8 55-59 33.859555099999994 35.0 34.0 35.0 30.0 39.0 60-64 33.56693865 35.0 34.0 35.0 30.0 37.2 65-69 33.250268250000005 35.0 34.0 35.0 29.2 35.8 70-74 32.9550145 35.0 33.6 35.0 29.0 35.0 75-79 32.6802702 35.0 33.0 35.0 28.0 35.0 80-84 32.37713695 35.0 33.0 35.0 27.0 35.0 85-89 32.092672900000004 35.0 33.0 35.0 27.0 35.0 90-94 31.7226129 35.0 33.0 35.0 25.2 35.0 95-99 31.193216200000002 35.0 33.0 35.0 23.8 35.0 100-101 30.120828125000003 34.0 31.5 35.0 18.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 9639.0 3 1739.0 4 1935.0 5 2407.0 6 2977.0 7 3643.0 8 4508.0 9 4966.0 10 5252.0 11 5380.0 12 5371.0 13 5434.0 14 5432.0 15 5439.0 16 5918.0 17 6460.0 18 7289.0 19 8479.0 20 9715.0 21 11734.0 22 14194.0 23 17466.0 24 21412.0 25 25772.0 26 31713.0 27 38851.0 28 47525.0 29 58277.0 30 72176.0 31 90969.0 32 120234.0 33 166182.0 34 268753.0 35 637503.0 36 1342437.0 37 705777.0 38 190613.0 39 36225.0 40 204.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.622450628559367 22.986606309758418 19.007948360422397 27.382994701259822 2 30.74111209843336 23.584234931994843 22.056470496409617 23.61818247316218 3 29.292014588972222 21.710551989473526 21.080339408736375 27.917094012817884 4 31.27760940453237 20.469156011458498 19.407278927151694 28.845955656857434 5 30.761394581983563 19.825592214127504 19.42921543008182 29.98379777380712 6 30.20345685088267 19.062720066900336 18.27865671164034 32.455166370576656 7 32.032568046295026 18.912725452180382 19.158697168060158 29.89600933346444 8 29.672107436775697 19.341592413684037 19.76659106241655 31.21970908712372 9 30.45037622287451 18.287655324584833 19.521642325974394 31.74032612656626 10-14 30.591277142960482 19.28416428494495 19.36724835689091 30.757310215203653 15-19 30.67308481196809 19.146027146713518 19.28576288348285 30.895125157835544 20-24 30.670887845570675 19.160429223769416 19.306116416206105 30.862566514453803 25-29 30.736721016805234 19.271167002728646 19.231001627422977 30.761110353043147 30-34 30.815074055845376 19.123376581145255 19.1163776736552 30.94517168935417 35-39 30.752447358526435 19.183705461346083 19.202467713894805 30.861379466232673 40-44 30.796176069486435 19.218617685168496 19.167724768546258 30.817481476798815 45-49 30.868044667759904 19.107915079444858 19.0915615061891 30.932478746606133 50-54 30.73992230855272 19.17160599068799 19.207131712350787 30.881339988408502 55-59 30.783858092132853 19.219887601194984 19.191387325794004 30.80486698087816 60-64 30.82699563878081 19.150204260898747 19.10898907955195 30.913811020768488 65-69 30.72898 19.21602 19.21079 30.84421 70-74 30.78879577607852 19.264981742743608 19.175451711408098 30.77077076976977 75-79 30.82900643742906 19.164885797799336 19.139284687991225 30.86682307678038 80-84 30.74050834452791 19.241679674779835 19.20254532303992 30.81526665765233 85-89 30.812202058436483 19.277605724458034 19.183160426955347 30.72703179015014 90-94 30.851646015092015 19.18288174904538 19.132236361608165 30.833235874254438 95-99 30.764077627569126 19.230201873603377 19.230026858342047 30.775693640485454 100-101 30.885662886143916 19.31885586506475 19.17649716338911 30.618984085402218 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.00544532981918 2 54.35929457159554 3 57.209108601790106 4 60.123565061389804 5 60.74519235579068 6 62.65862322145932 7 61.92857737975947 8 60.89181652389942 9 62.19070234944078 10-14 61.34858735816414 15-19 61.56820996980363 20-24 61.53345436002448 25-29 61.49783136984838 30-34 61.76024574519955 35-39 61.61382682475911 40-44 61.61365754628525 45-49 61.80052341436604 50-54 61.62126229696122 55-59 61.58872507301102 60-64 61.7408066595493 65-69 61.57319 70-74 61.559566545848284 75-79 61.69582951420944 80-84 61.55577500218025 85-89 61.539233848586626 90-94 61.68488188934646 95-99 61.53977126805458 100-101 61.50464697154614 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 155.0 1 101.5 2 45.0 3 45.0 4 42.5 5 47.5 6 57.0 7 54.5 8 71.0 9 95.5 10 110.5 11 137.0 12 155.5 13 183.5 14 244.0 15 326.5 16 410.5 17 489.5 18 620.5 19 751.5 20 924.0 21 1169.5 22 1459.0 23 1876.5 24 2367.5 25 2876.0 26 3611.5 27 4489.0 28 5365.0 29 6462.5 30 7766.0 31 9270.0 32 10705.5 33 12133.0 34 13654.0 35 15009.5 36 16316.5 37 17656.0 38 18964.0 39 20236.0 40 21331.0 41 22239.0 42 23192.5 43 24310.0 44 25616.0 45 27207.0 46 29379.0 47 32129.0 48 35681.0 49 39892.5 50 45020.5 51 51184.0 52 58409.0 53 66668.5 54 75473.5 55 85019.0 56 95157.0 57 105868.0 58 117193.0 59 129178.0 60 141797.0 61 154551.5 62 166594.5 63 177586.0 64 187188.0 65 194469.5 66 199074.5 67 199457.5 68 195247.5 69 186931.0 70 174156.0 71 157405.5 72 137667.5 73 116541.0 74 94988.0 75 74124.5 76 55427.5 77 38979.5 78 25461.0 79 15760.0 80 9004.5 81 4729.5 82 2395.0 83 1201.5 84 672.5 85 447.0 86 344.0 87 249.0 88 187.0 89 158.5 90 135.5 91 112.0 92 91.0 93 84.0 94 65.0 95 48.0 96 47.5 97 37.5 98 24.0 99 16.0 100 13.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.061149999999999996 2 0.0664 3 0.0615 4 0.0567 5 0.0446 6 0.030400000000000003 7 0.079975 8 0.09380000000000001 9 0.1124 10-14 0.053045 15-19 0.0542 20-24 0.035825 25-29 0.038279999999999995 30-34 0.05583 35-39 0.038655 40-44 0.02538 45-49 0.02185 50-54 0.030180000000000002 55-59 0.01851 60-64 4.4E-4 65-69 0.0 70-74 3.5E-5 75-79 0.004335 80-84 0.011120000000000001 85-89 3.15E-4 90-94 7.65E-4 95-99 0.00872 100-101 0.0061125 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.4001178874175181 #Duplication Level Relative count 1 100.0 2 0.2848688499924771 3 0.009529063644114549 4 0.0025076483273985656 5 0.0020061186619188525 6 0.0010030593309594263 7 0.0010030593309594263 8 0.0010030593309594263 9 5.015296654797131E-4 10++ 0.003510707658357992 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 400375 3.8455863 4.3568106 1 TTTTT 372640 3.647414 4.0732026 10-14 >>END_MODULE