##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L003_R2_008.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.451856 34.0 31.0 34.0 31.0 34.0 2 32.63840275 34.0 31.0 34.0 31.0 34.0 3 32.65644125 34.0 31.0 34.0 31.0 34.0 4 36.0639265 37.0 37.0 37.0 35.0 37.0 5 36.0698175 37.0 37.0 37.0 35.0 37.0 6 35.986414 37.0 37.0 37.0 35.0 37.0 7 36.011844 37.0 37.0 37.0 35.0 37.0 8 36.00461925 37.0 37.0 37.0 35.0 37.0 9 37.73818675 39.0 38.0 39.0 35.0 39.0 10-14 38.0047191 39.4 38.2 39.4 35.2 39.4 15-19 39.10483599999999 41.0 39.0 41.0 36.0 41.0 20-24 38.8297997 40.8 39.0 41.0 35.2 41.0 25-29 38.4808818 40.0 38.0 41.0 34.6 41.0 30-34 37.783941649999996 40.0 37.0 41.0 33.2 41.0 35-39 36.7898828 38.6 35.0 40.6 31.8 41.0 40-44 35.887168 36.6 35.0 40.0 31.0 41.0 45-49 34.94497115 35.0 34.8 38.8 30.4 41.0 50-54 33.637662899999995 34.8 33.2 36.2 28.0 39.8 55-59 33.77785225 35.0 34.0 35.0 30.0 39.0 60-64 33.454587249999996 35.0 34.0 35.0 29.4 37.2 65-69 33.12495439999999 35.0 34.0 35.0 29.0 35.8 70-74 32.80395615 35.0 33.0 35.0 28.8 35.0 75-79 32.49682655 35.0 33.0 35.0 27.0 35.0 80-84 32.1597878 35.0 33.0 35.0 27.0 35.0 85-89 31.81822335 35.0 33.0 35.0 25.4 35.0 90-94 31.378102849999998 35.0 33.0 35.0 24.0 35.0 95-99 30.768334949999996 35.0 32.0 35.0 21.4 35.0 100-101 29.6017855 34.0 30.5 35.0 10.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 10985.0 3 2013.0 4 2378.0 5 2705.0 6 3443.0 7 4119.0 8 4835.0 9 5406.0 10 5689.0 11 5901.0 12 5964.0 13 5930.0 14 5910.0 15 6005.0 16 6402.0 17 7129.0 18 7871.0 19 9045.0 20 10291.0 21 12526.0 22 15140.0 23 18382.0 24 22177.0 25 27153.0 26 32426.0 27 39188.0 28 48115.0 29 58906.0 30 73783.0 31 93454.0 32 123385.0 33 174162.0 34 282883.0 35 657157.0 36 1304010.0 37 680378.0 38 188536.0 39 35988.0 40 230.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.630595466053954 22.978989158673098 19.011167099654187 27.37924827561876 2 30.736129079075447 23.61075592233836 22.045887331062904 23.60722766752329 3 29.3146288914871 21.7603769444769 21.009595500765744 27.915398663270256 4 31.201884877809515 20.505253358658564 19.44714922241283 28.845712541119088 5 30.791728264431388 19.815744513734113 19.428622886602582 29.963904335231923 6 30.21531429120489 19.089153663625876 18.259664796417407 32.435867248751826 7 32.084152132716845 18.931225858456393 19.139077821196746 29.84554418763002 8 29.620377281578534 19.32083907455116 19.837567458005335 31.221216185864975 9 30.44837595155714 18.283018929347815 19.51843114118242 31.75017397791263 10-14 30.581921610220597 19.282334980803757 19.388257376909877 30.74748603206577 15-19 30.668618216642766 19.142566420666146 19.3036203377223 30.885195024968787 20-24 30.67585867647647 19.162976959587308 19.297116742637183 30.86404762129904 25-29 30.73535659038798 19.250241938215414 19.22429577505307 30.790105696343538 30-34 30.79678222054688 19.129391462251537 19.146172104327047 30.927654212874533 35-39 30.71933101912585 19.190510932291797 19.22520153439009 30.86495651419226 40-44 30.804074806465103 19.193381528409088 19.178909899679546 30.823633765446264 45-49 30.868697565366414 19.08993293048543 19.102692403956826 30.938677100191324 50-54 30.71976290271492 19.153381485673854 19.213335131525845 30.91352048008538 55-59 30.78899860368794 19.22637618626872 19.192425088355645 30.792200121687696 60-64 30.8462279390691 19.150397033255672 19.103156645884496 30.90021838179073 65-69 30.732060977289642 19.21419126740852 19.208091238433383 30.845656516868452 70-74 30.794835066571174 19.262845083397217 19.18029986877966 30.762019981251953 75-79 30.831106582325653 19.14712677864643 19.13211064793179 30.88965599109613 80-84 30.728151669158503 19.221733167486367 19.22025786829569 30.829857295059437 85-89 30.805101440811526 19.277419219353757 19.191383531068247 30.72609580876647 90-94 30.866362200973157 19.160673304590794 19.123152602953674 30.84981189148237 95-99 30.762467822047334 19.226239825755705 19.212982064163967 30.798310288032997 100-101 30.914905217219214 19.282981631034698 19.181678467032963 30.62043468471312 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.00984374167272 2 54.34335674659874 3 57.230027554757356 4 60.04759741892861 5 60.755632599663315 6 62.65118153995671 7 61.929696320346864 8 60.84159346744351 9 62.19854992946977 10-14 61.32940764228637 15-19 61.55381324161156 20-24 61.5399062977755 25-29 61.525462286731525 30-34 61.72443643342142 35-39 61.584287533318104 40-44 61.62770857191136 45-49 61.807374665557745 50-54 61.6332833828003 55-59 61.58119872537564 60-64 61.746446320859825 65-69 61.5777174941581 70-74 61.55685504782312 75-79 61.72076257342178 80-84 61.55800896421795 85-89 61.53119724957799 90-94 61.71617409245553 95-99 61.56077811008033 100-101 61.53533990193234 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 106.0 1 73.0 2 37.0 3 35.0 4 42.0 5 48.0 6 52.5 7 60.5 8 75.5 9 92.0 10 117.0 11 152.0 12 172.0 13 222.5 14 304.0 15 353.0 16 416.5 17 524.0 18 655.0 19 801.5 20 978.0 21 1212.0 22 1500.5 23 1881.5 24 2384.0 25 2996.5 26 3717.0 27 4471.5 28 5432.0 29 6572.0 30 7799.5 31 9225.0 32 10761.5 33 12204.0 34 13686.5 35 15133.5 36 16552.5 37 17973.0 38 18979.5 39 20066.5 40 21315.0 41 22275.0 42 23344.5 43 24551.0 44 25713.0 45 27355.5 46 29474.5 47 31969.5 48 35568.0 49 39886.5 50 44906.5 51 51228.5 52 58453.5 53 66816.5 54 75681.5 55 85092.0 56 95352.0 57 106189.5 58 117683.0 59 129387.5 60 141771.5 61 154303.5 62 166230.0 63 177633.0 64 187418.5 65 194412.5 66 198348.0 67 198551.0 68 194446.0 69 186067.5 70 173272.5 71 156647.0 72 137503.5 73 116325.5 74 94445.0 75 73914.0 76 54878.5 77 38606.5 78 25788.0 79 15955.0 80 9321.0 81 5210.5 82 2802.0 83 1522.0 84 949.0 85 687.5 86 539.5 87 412.0 88 333.0 89 283.0 90 252.0 91 224.0 92 186.0 93 170.0 94 135.0 95 102.5 96 96.0 97 78.5 98 54.5 99 35.5 100 23.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.083725 2 0.09225 3 0.080775 4 0.09962499999999999 5 0.057249999999999995 6 0.089075 7 0.13324999999999998 8 0.155475 9 0.166925 10-14 0.08723 15-19 0.086255 20-24 0.063205 25-29 0.062295 30-34 0.09321499999999999 35-39 0.044975 40-44 0.045805 45-49 0.03506 50-54 0.04778 55-59 0.047415 60-64 8.2E-4 65-69 4.7500000000000005E-4 70-74 2.6000000000000003E-4 75-79 0.00753 80-84 0.02028 85-89 7.999999999999999E-4 90-94 0.0018700000000000001 95-99 0.020829999999999998 100-101 0.0154625 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.3382953313245438 #Duplication Level Relative count 1 100.0 2 0.258217845610798 3 0.007019514249613927 4 0.0020055754998896933 5 0.005515332624696657 6 0.0010027877499448467 7 5.013938749724233E-4 8 5.013938749724233E-4 9 0.0 10++ 0.004011150999779387 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 404715 3.8843303 4.346854 60-64 TTTTT 379795 3.7044911 4.0607715 90-94 >>END_MODULE