##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L003_R2_007.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.54310625 34.0 31.0 34.0 31.0 34.0 2 32.736057 34.0 31.0 34.0 31.0 34.0 3 32.7600925 34.0 31.0 34.0 31.0 34.0 4 36.139126 37.0 37.0 37.0 35.0 37.0 5 36.03003025 37.0 37.0 37.0 35.0 37.0 6 36.0853655 37.0 37.0 37.0 35.0 37.0 7 36.0982045 37.0 37.0 37.0 35.0 37.0 8 36.0829915 37.0 37.0 37.0 35.0 37.0 9 37.83521325 39.0 39.0 39.0 35.0 39.0 10-14 37.9890843 39.4 38.6 39.4 35.2 39.4 15-19 39.197021050000004 41.0 39.6 41.0 36.2 41.0 20-24 38.41721485 40.6 38.6 41.0 33.8 41.0 25-29 38.44482395 40.0 38.0 41.0 34.8 41.0 30-34 37.938321499999994 40.0 37.2 41.0 33.4 41.0 35-39 36.70617795 38.6 35.2 40.6 31.8 41.0 40-44 35.83534075000001 36.6 35.0 40.0 30.8 41.0 45-49 34.65279475 35.0 34.0 38.8 29.2 41.0 50-54 33.708182900000004 34.8 33.2 36.2 28.6 39.8 55-59 33.89101945 35.0 34.2 35.2 30.0 39.2 60-64 33.56742195 35.0 34.0 35.0 30.0 37.2 65-69 33.23562735 35.0 34.0 35.0 29.4 36.0 70-74 32.898602200000006 35.0 33.6 35.0 29.0 35.0 75-79 32.4157591 35.0 33.0 35.0 27.0 35.0 80-84 32.20882195 35.0 33.0 35.0 27.0 35.0 85-89 31.8694703 35.0 33.0 35.0 26.2 35.0 90-94 31.421352000000002 35.0 33.0 35.0 24.0 35.0 95-99 30.796044550000005 35.0 32.2 35.0 22.0 35.0 100-101 29.555522375000002 34.0 30.5 35.0 9.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 12190.0 3 2014.0 4 2328.0 5 2741.0 6 3284.0 7 3914.0 8 4473.0 9 4938.0 10 5335.0 11 5643.0 12 5697.0 13 5661.0 14 5780.0 15 5749.0 16 6216.0 17 6914.0 18 7577.0 19 8642.0 20 10220.0 21 12012.0 22 14288.0 23 17283.0 24 20753.0 25 25157.0 26 30556.0 27 37141.0 28 45419.0 29 56947.0 30 70928.0 31 91844.0 32 123314.0 33 180530.0 34 310295.0 35 720719.0 36 1280837.0 37 642094.0 38 178222.0 39 32173.0 40 172.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.615693315027986 22.995642052714796 19.043133517754868 27.345531114502347 2 30.71468061127981 23.600610368811626 22.055892744474757 23.628816275433806 3 29.310746491324867 21.74206248816095 21.02737801306155 27.919813007452625 4 31.213006197385063 20.52647231704496 19.377342544462657 28.883178941107317 5 30.952738931485623 19.855392643096963 19.33649329411026 29.855375131307156 6 30.12667767485938 19.103003383829975 18.298520654132016 32.47179828717863 7 32.061584295238376 18.906765311864596 19.144178945768264 29.88747144712876 8 29.64014261926753 19.313572753938175 19.784152206713266 31.26213242008103 9 30.373487371885062 18.285314029412824 19.544493011547882 31.796705587154232 10-14 30.67463921167033 19.298325002680553 19.339431811003188 30.687603974645928 15-19 30.713667491633327 19.148016318332115 19.274111428914235 30.864204761120316 20-24 30.88199918019296 19.13905647926054 19.238732444797016 30.740211895749493 25-29 30.770529120148037 19.238768350369522 19.232318167647705 30.758384361834736 30-34 30.8065670996785 19.121660881416062 19.1367101761168 30.93506184278864 35-39 30.876961037764495 19.20771250779098 19.149606203114374 30.765720251330148 40-44 30.849598282504616 19.25584405500532 19.1262124167808 30.768345245709263 45-49 30.861784063156133 19.113493207814734 19.174863599814422 30.849859129214714 50-54 30.744965978590727 19.16190770836928 19.193966233387965 30.899160079652027 55-59 30.788996396631518 19.208221620371 19.18557047463432 30.81721150836316 60-64 30.83843967075174 19.14111031288825 19.10570028456023 30.914749731799784 65-69 30.71762 19.2024 19.208434999999998 30.871545 70-74 30.80108432314454 19.2506958270179 19.171875598439236 30.77634425139833 75-79 30.894156621225736 19.169972895647568 19.10147074125481 30.83439974187188 80-84 30.735336606110504 19.208717038774655 19.227541700702176 30.828404654412665 85-89 30.825185412592703 19.251214625607314 19.183644591822297 30.739955369977682 90-94 30.883115 19.154905 19.104245 30.857734999999998 95-99 30.797597045425977 19.19090713170642 19.22117588088837 30.790319941979227 100-101 31.041254198857697 19.30689405301225 19.121449192884157 30.53040255524589 >>END_MODULE >>Per base GC content warn #Base %GC 1 57.96122442953033 2 54.343496886713616 3 57.2305594987775 4 60.09618513849237 5 60.808114062792775 6 62.598475962038016 7 61.94905574236714 8 60.90227503934857 9 62.1701929590393 10-14 61.362243186316256 15-19 61.57787225275365 20-24 61.622211075942445 25-29 61.52891348198277 30-34 61.741628942467145 35-39 61.64268128909465 40-44 61.61794352821388 45-49 61.71164319237084 50-54 61.644126058242755 55-59 61.60620790499468 60-64 61.75318940255152 65-69 61.589165 70-74 61.57742857454287 75-79 61.72855636309762 80-84 61.563741260523166 85-89 61.565140782570396 90-94 61.74085 95-99 61.58791698740521 100-101 61.571656754103586 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 119.0 1 90.5 2 49.0 3 34.5 4 36.5 5 42.5 6 43.0 7 53.0 8 67.5 9 77.5 10 93.5 11 124.0 12 169.0 13 212.5 14 257.5 15 314.0 16 416.0 17 547.5 18 654.0 19 812.0 20 1020.5 21 1251.0 22 1488.0 23 1885.5 24 2445.0 25 2994.0 26 3668.5 27 4484.0 28 5418.5 29 6607.5 30 7922.0 31 9279.5 32 10734.0 33 12272.0 34 13781.0 35 15151.5 36 16427.0 37 17856.0 38 19222.0 39 20370.0 40 21471.0 41 22459.5 42 23258.5 43 24440.5 44 25732.5 45 27259.5 46 29528.0 47 32161.0 48 35514.5 49 39864.0 50 45020.0 51 51068.5 52 58258.5 53 66392.0 54 75445.0 55 84593.5 56 95003.0 57 106246.5 58 117423.5 59 129561.0 60 141759.0 61 153879.0 62 165732.5 63 177145.0 64 187143.5 65 194717.0 66 198941.5 67 198817.5 68 194685.5 69 185896.5 70 173116.0 71 156749.5 72 137357.0 73 116473.0 74 94685.0 75 73652.0 76 54786.5 77 38759.5 78 25852.5 79 16127.0 80 9437.5 81 5292.0 82 2930.0 83 1677.0 84 1098.0 85 791.5 86 600.5 87 482.0 88 408.5 89 351.5 90 297.5 91 244.0 92 199.5 93 173.5 94 142.5 95 120.5 96 93.0 97 85.0 98 75.5 99 47.5 100 32.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.10204999999999999 2 0.10957499999999999 3 0.092275 4 0.1353 5 0.067325 6 0.150125 7 0.17422500000000002 8 0.202825 9 0.20679999999999998 10-14 0.11387000000000001 15-19 0.11111499999999999 20-24 0.086245 25-29 0.08034999999999999 30-34 0.12821 35-39 0.036664999999999996 40-44 0.05911999999999999 45-49 0.041375 50-54 0.057784999999999996 55-59 0.07128 60-64 7.999999999999999E-5 65-69 0.0 70-74 2.9E-4 75-79 0.003145 80-84 0.024765 85-89 4.9999999999999996E-5 90-94 0.0 95-99 0.028905 100-101 0.01745 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.3641849799923133 #Duplication Level Relative count 1 100.0 2 0.2622289966105774 3 0.008022301999558773 4 0.0010027877499448467 5 0.0 6 5.013938749724233E-4 7 0.0010027877499448467 8 0.0 9 0.0 10++ 0.0060167264996690804 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 401010 3.8514283 4.4811797 60-64 TTTTT 381585 3.7477205 4.1606317 10-14 >>END_MODULE