##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L003_R2_006.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.451346 34.0 31.0 34.0 31.0 34.0 2 32.6184715 34.0 31.0 34.0 31.0 34.0 3 32.65108475 34.0 31.0 34.0 31.0 34.0 4 36.04654975 37.0 37.0 37.0 35.0 37.0 5 36.045196 37.0 37.0 37.0 35.0 37.0 6 36.05612675 37.0 37.0 37.0 35.0 37.0 7 36.05856925 37.0 37.0 37.0 35.0 37.0 8 36.03507125 37.0 37.0 37.0 35.0 37.0 9 37.7709 39.0 38.0 39.0 35.0 39.0 10-14 38.0191402 39.4 38.2 39.4 35.2 39.4 15-19 39.1599034 41.0 39.0 41.0 36.0 41.0 20-24 38.94221475 41.0 39.0 41.0 35.4 41.0 25-29 38.555566150000004 40.0 38.2 41.0 34.8 41.0 30-34 37.90907885 40.0 37.0 41.0 33.2 41.0 35-39 36.9196723 38.6 35.2 40.8 32.4 41.0 40-44 36.01398715 37.0 35.0 40.0 31.0 41.0 45-49 35.094802900000005 35.0 35.0 38.8 30.8 41.0 50-54 33.81393305 35.0 33.2 36.2 28.8 39.8 55-59 33.92604845 35.0 34.4 35.0 30.0 39.0 60-64 33.6015908 35.0 34.0 35.0 30.0 37.2 65-69 33.2848111 35.0 34.0 35.0 29.4 36.0 70-74 32.998598799999996 35.0 33.8 35.0 29.0 35.0 75-79 32.705027 35.0 33.0 35.0 28.6 35.0 80-84 32.4192671 35.0 33.0 35.0 27.0 35.0 85-89 32.12351099999999 35.0 33.0 35.0 27.0 35.0 90-94 31.749381600000003 35.0 33.0 35.0 25.6 35.0 95-99 31.181856449999998 35.0 33.0 35.0 23.8 35.0 100-101 30.064697625 34.0 31.0 35.0 18.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 10609.0 3 1800.0 4 2036.0 5 2411.0 6 2876.0 7 3677.0 8 4254.0 9 4813.0 10 5165.0 11 5282.0 12 5329.0 13 5174.0 14 5198.0 15 5291.0 16 5772.0 17 6371.0 18 7184.0 19 8141.0 20 9528.0 21 11417.0 22 13930.0 23 16975.0 24 20660.0 25 25467.0 26 30753.0 27 37469.0 28 45227.0 29 56198.0 30 69953.0 31 88767.0 32 116186.0 33 162868.0 34 262897.0 35 627947.0 36 1353974.0 37 723764.0 38 196166.0 39 38251.0 40 220.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.614566899763634 23.01006003577814 19.055188756471832 27.320184307986395 2 30.742673333625376 23.595676906998428 22.084722109228817 23.57692765014738 3 29.30667467677943 21.727631134307064 21.081890887245148 27.883803301668358 4 31.20224851845882 20.520409174692205 19.415498337490025 28.86184396935895 5 30.7626298721211 19.819665339523056 19.452712842586415 29.96499194576943 6 30.16196104070861 19.100942892688117 18.3206515459008 32.41644452070247 7 32.05236111510616 18.930941807226354 19.178740396772888 29.837956680894596 8 29.64355640016832 19.35208994125238 19.824307535116727 31.180046123462574 9 30.392263082421312 18.306794874649913 19.565587821626128 31.735354221302646 10-14 30.563109915617964 19.293153980018342 19.417300960319732 30.726435144043958 15-19 30.64981727727789 19.168135213914077 19.32911106618581 30.852936442622227 20-24 30.61864436656255 19.212847196264136 19.326676339535187 30.841832097638132 25-29 30.70933868906328 19.27930268700088 19.247369527214715 30.763989096721122 30-34 30.779862181759526 19.143881392786987 19.16778889376542 30.908467531688068 35-39 30.715595069554634 19.210837502520967 19.223214172752613 30.850353255171786 40-44 30.779220090876326 19.238560755491964 19.211379461662375 30.770839691969336 45-49 30.85736143786111 19.120617626249114 19.125182820269863 30.89683811561991 50-54 30.692487109605864 19.18666114801629 19.248438428468795 30.872413313909043 55-59 30.76139744477379 19.25588394983475 19.211895399958774 30.77082320543268 60-64 30.809371161874232 19.165908833181767 19.148593829718767 30.87612617522523 65-69 30.687638253477544 19.234514048010823 19.270429139594306 30.807418558917327 70-74 30.75560115112023 19.29772385954477 19.230803846160768 30.71587114317423 75-79 30.80247162654981 19.18410583788047 19.183295835733965 30.830126699835752 80-84 30.69673751267905 19.256276373750058 19.270246704846905 30.776739408723984 85-89 30.77971615594323 19.31486386297277 19.22429884485977 30.681121136224228 90-94 30.83396154169808 19.193150959657547 19.17881095894055 30.79407653970383 95-99 30.714585359390195 19.26456948427113 19.270499528746466 30.750345627592207 100-101 30.851884315074518 19.360854886839093 19.211003688029503 30.576257110056883 >>END_MODULE >>Per base GC content warn #Base %GC 1 57.934751207750026 2 54.31960098377275 3 57.190477978447795 4 60.06409248781777 5 60.72762181789053 6 62.57840556141109 7 61.89031779600076 8 60.823602523630896 9 62.12761730372396 10-14 61.28954505966192 15-19 61.50275371990011 20-24 61.460476464200674 25-29 61.473327785784406 30-34 61.6883297134476 35-39 61.56594832472643 40-44 61.550059782845665 45-49 61.75419955348103 50-54 61.56490042351491 55-59 61.53222065020647 60-64 61.68549733709947 65-69 61.49505681239488 70-74 61.47147229429446 75-79 61.63259832638557 80-84 61.473476921403034 85-89 61.46083729216746 90-94 61.628038081401904 95-99 61.4649309869824 100-101 61.4281414251314 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 158.0 1 115.5 2 66.5 3 56.0 4 53.5 5 64.5 6 75.5 7 68.5 8 74.5 9 101.5 10 112.0 11 132.0 12 163.5 13 200.0 14 250.0 15 307.5 16 380.0 17 461.0 18 580.0 19 746.5 20 938.0 21 1208.5 22 1534.0 23 1923.0 24 2386.5 25 2915.5 26 3600.5 27 4426.5 28 5529.0 29 6724.5 30 7924.5 31 9293.0 32 10675.5 33 12280.5 34 13826.0 35 15117.0 36 16531.5 37 17871.5 38 19134.5 39 20397.0 40 21376.0 41 22282.5 42 23376.0 43 24479.5 44 25758.5 45 27426.0 46 29401.0 47 32239.5 48 35807.0 49 40047.0 50 45343.5 51 51600.0 52 58943.5 53 66813.0 54 75761.5 55 85367.0 56 95595.5 57 106633.5 58 117831.0 59 129893.0 60 142231.0 61 154708.0 62 166669.5 63 177648.0 64 187891.0 65 195498.0 66 199366.5 67 199346.0 68 194972.5 69 186193.0 70 173159.0 71 156258.0 72 137108.5 73 115659.5 74 93560.5 75 73023.0 76 54145.0 77 38080.5 78 25078.0 79 15337.5 80 8708.5 81 4622.5 82 2330.5 83 1191.5 84 709.5 85 484.0 86 362.5 87 272.0 88 199.0 89 169.0 90 148.0 91 122.5 92 102.0 93 84.5 94 72.5 95 59.5 96 39.5 97 26.5 98 25.0 99 19.5 100 13.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.13455 2 0.129375 3 0.12625 4 0.12090000000000001 5 0.13012500000000002 6 0.04695 7 0.049874999999999996 8 0.07255 9 0.086825 10-14 0.033815 15-19 0.03159 20-24 0.012425000000000002 25-29 0.009895000000000001 30-34 0.031375 35-39 0.013495 40-44 0.0047599999999999995 45-49 0.00425 50-54 0.011785 55-59 0.008069999999999999 60-64 1.9999999999999998E-5 65-69 2.55E-4 70-74 1.9999999999999998E-5 75-79 2.65E-4 80-84 0.00237 85-89 1.9999999999999998E-5 90-94 4.9999999999999996E-6 95-99 7.5E-4 100-101 7.999999999999999E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.3842041627946426 #Duplication Level Relative count 1 100.0 2 0.2929006695588936 3 0.008024675878325851 4 0.0010030844847907314 5 0.002006168969581463 6 5.015422423953657E-4 7 0.0015046267271860972 8 0.0 9 0.0 10++ 0.0025077112119768286 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 408295 3.8993049 4.363381 1 TTTTT 381015 3.6855862 4.093481 10-14 >>END_MODULE