##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L003_R2_004.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.60965125 34.0 31.0 34.0 31.0 34.0 2 32.776509 34.0 31.0 34.0 31.0 34.0 3 32.8169305 34.0 31.0 34.0 31.0 34.0 4 36.18799225 37.0 37.0 37.0 35.0 37.0 5 36.197846 37.0 37.0 37.0 35.0 37.0 6 36.1898385 37.0 37.0 37.0 35.0 37.0 7 36.1653115 37.0 37.0 37.0 35.0 37.0 8 36.13671975 37.0 37.0 37.0 35.0 37.0 9 37.89706925 39.0 39.0 39.0 37.0 39.0 10-14 38.1922804 39.4 39.2 39.4 36.6 39.4 15-19 39.35807075 41.0 40.0 41.0 37.0 41.0 20-24 39.1757809 41.0 39.4 41.0 36.2 41.0 25-29 38.78504875 40.4 38.6 41.0 35.0 41.0 30-34 38.124087599999996 40.0 37.4 41.0 34.2 41.0 35-39 37.1564877 39.0 35.2 40.8 33.0 41.0 40-44 36.2197369 37.0 35.0 40.0 32.0 41.0 45-49 35.266763649999994 35.0 35.0 39.0 31.2 41.0 50-54 33.940823449999996 34.8 33.4 36.2 29.6 39.8 55-59 34.155062199999996 35.0 35.0 35.2 31.0 39.2 60-64 33.786291649999995 35.0 35.0 35.0 31.0 37.2 65-69 33.46086375 35.0 34.2 35.0 30.2 36.0 70-74 33.174578600000004 35.0 34.0 35.0 29.6 35.0 75-79 32.89737484999999 35.0 33.8 35.0 29.0 35.0 80-84 32.5859722 35.0 33.0 35.0 28.6 35.0 85-89 32.259884899999996 35.0 33.0 35.0 27.0 35.0 90-94 31.889315500000002 35.0 33.0 35.0 26.6 35.0 95-99 31.3684551 35.0 33.0 35.0 24.2 35.0 100-101 30.300643125 34.0 31.5 35.0 20.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 10645.0 3 1755.0 4 2076.0 5 2145.0 6 2627.0 7 3277.0 8 3679.0 9 4135.0 10 4419.0 11 4657.0 12 4790.0 13 4664.0 14 4770.0 15 4960.0 16 5331.0 17 5778.0 18 6366.0 19 7330.0 20 8431.0 21 10237.0 22 12359.0 23 14844.0 24 18138.0 25 22106.0 26 26790.0 27 32837.0 28 40055.0 29 49841.0 30 62838.0 31 79825.0 32 106058.0 33 151366.0 34 253023.0 35 634048.0 36 1393511.0 37 752736.0 38 206240.0 39 41045.0 40 268.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.644164652014283 22.979480590234726 18.987714793323708 27.38863996442728 2 30.7341717644732 23.561617428552474 22.070391664257023 23.633819142717304 3 29.32425470041563 21.734193129740035 21.021751767584593 27.919800402259742 4 31.225211853005113 20.52076228284363 19.397187307968125 28.856838556183128 5 30.76211787999788 19.797492289782074 19.405324730054787 30.035065100165266 6 30.19453937732377 19.01768881210801 18.31108774301774 32.47668406755048 7 32.10474421395632 18.90725775853152 19.102653266638733 29.885344760873416 8 29.635003249504305 19.286497044379157 19.793013841334997 31.28548586478154 9 30.418348700172615 18.25438685947943 19.537363632195117 31.789900808152836 10-14 30.594074959349292 19.242793904329282 19.38812040371332 30.775010732608106 15-19 30.690991867079255 19.109985677472377 19.279585071248167 30.9194373842002 20-24 30.65159653329147 19.136264521917802 19.298275728931575 30.91386321585915 25-29 30.718052489422227 19.23424536852814 19.24541582239739 30.802286319652243 30-34 30.818050408457225 19.09055968750255 19.146386405295562 30.94500349874466 35-39 30.724866143478817 19.145176020374457 19.21573771528849 30.91422012085824 40-44 30.805416087685337 19.172008456926214 19.163571746788808 30.859003708599637 45-49 30.86863972706334 19.076717405340606 19.094518927375745 30.960123940220306 50-54 30.75357448936688 19.158301195398078 19.170956867926723 30.917167447308312 55-59 30.801814357732543 19.203397099587573 19.185118219519993 30.809670323159892 60-64 30.85287785606437 19.127554245728902 19.087698434663146 30.93186946354358 65-69 30.73221 19.200805000000003 19.19859 30.868395 70-74 30.796400000000002 19.251495 19.17514 30.776965 75-79 30.840579350634883 19.147505174666858 19.111226117600257 30.900689357098 80-84 30.72377848481417 19.223880725424138 19.205543441855106 30.84679734790659 85-89 30.792172468868795 19.244873396748094 19.18683812424359 30.77611601013952 90-94 30.879383161373962 19.16272642936722 19.101488388898506 30.856402020360314 95-99 30.758058150638234 19.225420133284178 19.202560840981857 30.813960875095724 100-101 30.891037107944985 19.31971581150222 19.13831836589738 30.650928714655418 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.03280461644157 2 54.3679909071905 3 57.244055102675375 4 60.08205040918825 5 60.79718298016314 6 62.671223444874244 7 61.99008897482974 8 60.92048911428585 9 62.20824950832545 10-14 61.369085691957395 15-19 61.610429251279456 20-24 61.56545974915062 25-29 61.520338809074474 30-34 61.76305390720188 35-39 61.63908626433705 40-44 61.664419796284974 45-49 61.828763667283646 50-54 61.6707419366752 55-59 61.61148468089244 60-64 61.78474731960796 65-69 61.600604999999995 70-74 61.573365 75-79 61.741268707732885 80-84 61.570575832720756 85-89 61.56828847900832 90-94 61.73578518173427 95-99 61.57201902573396 100-101 61.541965822600396 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 28.0 1 21.5 2 17.0 3 20.0 4 27.0 5 29.5 6 36.5 7 58.0 8 80.5 9 106.5 10 136.0 11 173.0 12 228.0 13 294.5 14 350.0 15 421.0 16 502.0 17 582.5 18 695.0 19 860.5 20 1035.5 21 1259.0 22 1565.0 23 1928.0 24 2363.0 25 2877.5 26 3567.5 27 4531.0 28 5559.0 29 6526.0 30 7724.0 31 9059.0 32 10576.5 33 12183.0 34 13465.0 35 14872.5 36 16358.5 37 17690.5 38 19130.0 39 20360.5 40 21479.5 41 22369.5 42 23047.0 43 24277.0 44 25691.0 45 27345.0 46 29560.0 47 32178.5 48 35526.5 49 39790.0 50 44981.0 51 51217.5 52 58479.5 53 66451.5 54 75201.5 55 84745.5 56 94927.5 57 105894.0 58 117619.0 59 129684.0 60 141533.0 61 153645.5 62 165998.5 63 177634.0 64 187585.5 65 194802.5 66 198686.0 67 198660.5 68 194651.5 69 186554.5 70 173965.5 71 157142.5 72 137360.0 73 116402.0 74 95010.5 75 73954.0 76 55089.5 77 39064.0 78 25912.5 79 16002.5 80 9167.0 81 4962.0 82 2661.0 83 1472.5 84 911.0 85 653.0 86 499.0 87 384.5 88 322.0 89 295.0 90 252.5 91 211.0 92 182.5 93 140.5 94 106.0 95 97.0 96 89.0 97 70.0 98 46.5 99 35.0 100 28.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.1482 2 0.140875 3 0.13915 4 0.122375 5 0.1001 6 0.14875000000000002 7 0.176825 8 0.21555 9 0.226175 10-14 0.152415 15-19 0.12936 20-24 0.09024499999999999 25-29 0.093585 30-34 0.128465 35-39 0.09451999999999999 40-44 0.079535 45-49 0.064725 50-54 0.08432999999999999 55-59 0.075935 60-64 0.002035 65-69 0.0 70-74 0.0 75-79 0.024965 80-84 0.03972 85-89 0.009085 90-94 0.004965 95-99 0.04065 100-101 0.0399375 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.39758253833474594 #Duplication Level Relative count 1 100.0 2 0.2773125257003019 3 0.006519100965829881 4 0.003008815830383022 5 0.0020058772202553483 6 5.014693050638371E-4 7 0.0 8 0.0 9 0.0 10++ 0.004513223745574534 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 370695 3.6423335 3.9571319 10-14 AAAAA 376920 3.6346042 4.0806293 1 >>END_MODULE