##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L003_R2_003.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.5162845 34.0 31.0 34.0 31.0 34.0 2 32.70444125 34.0 31.0 34.0 31.0 34.0 3 32.7331865 34.0 31.0 34.0 31.0 34.0 4 36.14482525 37.0 37.0 37.0 35.0 37.0 5 36.156462 37.0 37.0 37.0 35.0 37.0 6 36.1005885 37.0 37.0 37.0 35.0 37.0 7 36.10312225 37.0 37.0 37.0 35.0 37.0 8 36.0647955 37.0 37.0 37.0 35.0 37.0 9 37.80110875 39.0 38.0 39.0 35.0 39.0 10-14 38.0915605 39.4 38.4 39.4 35.2 39.4 15-19 39.253432600000004 41.0 39.4 41.0 36.0 41.0 20-24 39.04738210000001 41.0 39.0 41.0 35.6 41.0 25-29 38.6564523 40.2 38.2 41.0 35.0 41.0 30-34 37.9848098 40.0 37.2 41.0 33.4 41.0 35-39 37.02540685 38.6 35.2 40.8 32.6 41.0 40-44 36.108357 37.0 35.0 40.0 31.8 41.0 45-49 35.1753689 35.0 35.0 38.8 31.0 41.0 50-54 33.860579 34.8 33.2 36.2 28.8 39.8 55-59 34.06498839999999 35.0 35.0 35.0 31.0 39.2 60-64 33.6958604 35.0 34.4 35.0 30.4 37.2 65-69 33.3630658 35.0 34.0 35.0 29.8 36.0 70-74 33.070718549999995 35.0 34.0 35.0 29.0 35.0 75-79 32.8001831 35.0 33.0 35.0 29.0 35.0 80-84 32.48437075 35.0 33.0 35.0 27.4 35.0 85-89 32.1593415 35.0 33.0 35.0 27.0 35.0 90-94 31.7520989 35.0 33.0 35.0 25.4 35.0 95-99 31.18934815 35.0 33.0 35.0 23.8 35.0 100-101 30.036971375 34.0 30.5 35.0 18.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 9685.0 3 1551.0 4 1781.0 5 2139.0 6 2597.0 7 3212.0 8 3737.0 9 4226.0 10 4607.0 11 4729.0 12 4736.0 13 4799.0 14 4909.0 15 5073.0 16 5666.0 17 5952.0 18 6941.0 19 7888.0 20 9062.0 21 10678.0 22 13219.0 23 16113.0 24 19671.0 25 23895.0 26 29187.0 27 35487.0 28 43808.0 29 54499.0 30 68858.0 31 87206.0 32 115018.0 33 163384.0 34 267503.0 35 644747.0 36 1364990.0 37 717952.0 38 193173.0 39 37089.0 40 233.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.650602590595106 22.95321333672104 19.02421501764153 27.37196905504232 2 30.778321479544957 23.570038774198842 22.053351055631065 23.598288690625132 3 29.328851840547586 21.72056299691282 21.02840002201552 27.92218514052407 4 31.220195939417984 20.435497646195312 19.413447582127997 28.930858832258703 5 30.736866756304103 19.813993147590022 19.42328468325743 30.025855412848447 6 30.22305224724181 19.032542719473557 18.27607722004627 32.46832781323835 7 32.033730976350085 18.92401161440593 19.137667183792136 29.904590225451845 8 29.65464995115761 19.273774517051734 19.799187346788006 31.272388185002654 9 30.44714645755527 18.235407137720085 19.49485007902048 31.82259632570417 10-14 30.60621718334668 19.239276993457572 19.36229485132463 30.79221097187112 15-19 30.689400909389057 19.101329299967816 19.287143917668015 30.92212587297511 20-24 30.65640312264345 19.13062021470626 19.304585854578118 30.908390808072173 25-29 30.741904654342427 19.21965205835093 19.242970733111612 30.795472554195026 30-34 30.806162346805117 19.1204146410302 19.125475707730857 30.947947304433825 35-39 30.727993143486966 19.149201360234677 19.209859825057645 30.912945671220715 40-44 30.81768369081217 19.181670932158568 19.15507039212308 30.845574984906182 45-49 30.8676607199665 19.05178275186303 19.09432600387742 30.986230524293052 50-54 30.761800197788304 19.14245301126785 19.180196311194134 30.915550479749715 55-59 30.794308667131148 19.207235100379165 19.18225459013123 30.81620164235846 60-64 30.849171698343397 19.124348248696496 19.101988203976408 30.9244918489837 65-69 30.763155759207 19.191206665491 19.186641657958738 30.85899591734326 70-74 30.81737 19.240395 19.176035 30.766199999999998 75-79 30.826657910735207 19.147700885392897 19.139414688451748 30.88622651542015 80-84 30.724900792876653 19.216899495525798 19.217344684553062 30.840855027044483 85-89 30.814476343849567 19.271649749951823 19.175108523878254 30.738765382320356 90-94 30.882319558726724 19.156555554011106 19.1078854128677 30.853239474394478 95-99 30.75674819638924 19.21166347965572 19.214624728710568 30.816963595244474 100-101 30.90319463723652 19.331827617171665 19.147080645254057 30.61789710033776 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.022571645637434 2 54.37661017017009 3 57.25103698107166 4 60.15105477167669 5 60.76272216915255 6 62.69138006048017 7 61.93832120180193 8 60.92703813616026 9 62.26974278325943 10-14 61.3984281552178 15-19 61.611526782364166 20-24 61.564793930715624 25-29 61.53737720853746 30-34 61.75410965123894 35-39 61.64093881470768 40-44 61.66325867571836 45-49 61.85389124425955 50-54 61.67735067753802 55-59 61.610510309489605 60-64 61.7736635473271 65-69 61.62215167655026 70-74 61.58357 75-79 61.712884426155355 80-84 61.565755819921144 85-89 61.55324172616993 90-94 61.7355590331212 95-99 61.57371179163371 100-101 61.521091737574274 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 34.0 1 24.0 2 18.5 3 19.0 4 20.0 5 26.0 6 29.0 7 38.0 8 58.0 9 78.0 10 103.5 11 133.0 12 163.5 13 217.5 14 285.5 15 387.5 16 488.0 17 568.0 18 688.0 19 840.5 20 1040.0 21 1213.0 22 1512.0 23 1925.0 24 2353.0 25 2884.0 26 3578.0 27 4446.0 28 5352.0 29 6437.0 30 7761.5 31 9107.5 32 10517.0 33 12111.5 34 13485.0 35 14818.5 36 16280.5 37 17615.0 38 18877.0 39 20094.5 40 21112.5 41 21996.0 42 22931.5 43 23983.0 44 25486.0 45 27238.0 46 29287.5 47 31991.0 48 35373.5 49 39694.5 50 45020.0 51 51124.0 52 58150.5 53 66441.5 54 75418.0 55 84931.0 56 95389.0 57 106304.5 58 117782.5 59 129862.0 60 142062.5 61 154816.5 62 166741.5 63 177477.0 64 187623.5 65 195035.0 66 199246.0 67 199819.5 68 195928.5 69 187072.5 70 174264.5 71 157687.0 72 137819.5 73 116450.0 74 94627.0 75 73847.5 76 54613.5 77 38193.0 78 25318.5 79 15659.5 80 9037.5 81 4875.0 82 2434.5 83 1239.0 84 694.5 85 464.0 86 345.0 87 285.5 88 233.5 89 183.5 90 143.5 91 125.5 92 117.5 93 87.0 94 80.5 95 78.0 96 52.5 97 29.0 98 23.5 99 20.0 100 14.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.12912500000000002 2 0.0882 3 0.07050000000000001 4 0.06605 5 0.07895 6 0.19042499999999998 7 0.201525 8 0.24034999999999998 9 0.19992500000000002 10-14 0.13645000000000002 15-19 0.096665 20-24 0.09234 25-29 0.080085 30-34 0.11987 35-39 0.07165500000000001 40-44 0.05842 45-49 0.054655 50-54 0.07498 55-59 0.082105 60-64 1.9999999999999998E-4 65-69 1.65E-4 70-74 0.0 75-79 0.014445 80-84 0.042460000000000005 85-89 0.00127 90-94 2.9E-4 95-99 0.04218 100-101 0.025424999999999996 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.39604059291222365 #Duplication Level Relative count 1 100.0 2 0.26674822878173277 3 0.00501406445078445 4 0.00200562578031378 5 0.0015042193352353352 6 5.01406445078445E-4 7 5.01406445078445E-4 8 0.0 9 0.00100281289015689 10++ 0.00401125156062756 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 383655 3.7070131 4.3787665 60-64 TTTTT 366725 3.5814955 3.9376116 10-14 >>END_MODULE