##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L003_R2_002.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.568356 34.0 31.0 34.0 31.0 34.0 2 32.75763475 34.0 31.0 34.0 31.0 34.0 3 32.7807125 34.0 31.0 34.0 31.0 34.0 4 36.183403 37.0 37.0 37.0 35.0 37.0 5 36.17399025 37.0 37.0 37.0 35.0 37.0 6 36.149404 37.0 37.0 37.0 35.0 37.0 7 36.1471185 37.0 37.0 37.0 35.0 37.0 8 36.116996 37.0 37.0 37.0 35.0 37.0 9 37.87712625 39.0 39.0 39.0 35.0 39.0 10-14 38.1662058 39.4 39.0 39.4 35.4 39.4 15-19 39.311397750000005 41.0 40.0 41.0 36.6 41.0 20-24 39.104297700000004 41.0 39.0 41.0 35.8 41.0 25-29 38.7127627 40.4 38.4 41.0 35.0 41.0 30-34 38.044365049999996 40.0 37.2 41.0 33.8 41.0 35-39 37.06185240000001 38.8 35.2 40.8 32.8 41.0 40-44 36.1214624 37.0 35.0 40.0 31.8 41.0 45-49 35.16768235 35.0 35.0 39.0 31.0 41.0 50-54 33.83991925 34.8 33.2 36.2 28.8 39.8 55-59 34.05476755 35.0 35.0 35.2 31.0 39.2 60-64 33.68258805 35.0 34.6 35.0 30.6 37.2 65-69 33.31473395 35.0 34.0 35.0 29.6 36.0 70-74 33.00834265 35.0 34.0 35.0 29.0 35.0 75-79 32.697837 35.0 33.0 35.0 28.6 35.0 80-84 32.3663749 35.0 33.0 35.0 27.0 35.0 85-89 32.0235771 35.0 33.0 35.0 26.8 35.0 90-94 31.603469150000002 35.0 33.0 35.0 24.4 35.0 95-99 31.01102155 35.0 32.6 35.0 23.0 35.0 100-101 29.852217500000002 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 9611.0 3 1731.0 4 2153.0 5 2271.0 6 2896.0 7 3465.0 8 3979.0 9 4509.0 10 4666.0 11 5059.0 12 5078.0 13 5236.0 14 5159.0 15 5305.0 16 5758.0 17 6362.0 18 7360.0 19 8183.0 20 9461.0 21 11452.0 22 13320.0 23 16494.0 24 19388.0 25 24154.0 26 29147.0 27 34934.0 28 43590.0 29 53644.0 30 67584.0 31 86392.0 32 115041.0 33 163776.0 34 268925.0 35 643912.0 36 1350572.0 37 722903.0 38 197518.0 39 38765.0 40 247.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.62113597246127 22.945166640588326 19.056022531685183 27.377674855265216 2 30.78873981769262 23.532632810773567 22.113159911997133 23.565467459536677 3 29.346020544774344 21.75954356067715 21.004942256922288 27.889493637626217 4 31.18201439316943 20.52037497704309 19.42534913269169 28.872261497095796 5 30.77770653998017 19.827823081346725 19.39156247513142 30.002907903541686 6 30.157022757182606 19.063321895650674 18.318445316459243 32.46121003070747 7 32.03514146088345 18.907981181622983 19.130664307941814 29.92621304955175 8 29.712817119314682 19.284926925019967 19.78678751863161 31.21546843703374 9 30.393060077994488 18.294748856789482 19.53340533620944 31.778785729006582 10-14 30.597454408483472 19.25602954297735 19.394854506342703 30.75166154219648 15-19 30.685772921298383 19.117486423150954 19.29479494533358 30.901945710217078 20-24 30.618135609603996 19.154274681885745 19.328599352654177 30.898990355856082 25-29 30.738788668948676 19.23892825088327 19.232419430205532 30.78986364996253 30-34 30.81021549931304 19.10895167661986 19.13402003657108 30.946812787496032 35-39 30.719811024554843 19.17817813471094 19.223953191977287 30.87805764875693 40-44 30.81651633921572 19.194155890182735 19.152472418152104 30.836855352449437 45-49 30.84697390271488 19.095024738426154 19.10638441122756 30.95161694763141 50-54 30.736144783718476 19.170392886957956 19.18008779646013 30.91337453286344 55-59 30.7841341789026 19.22188468340134 19.175379841244126 30.81860129645193 60-64 30.84520514815004 19.146127334948304 19.104762254286396 30.90390526261526 65-69 30.748710000000003 19.185215 19.19604 30.870035 70-74 30.79383 19.24464 19.16131 30.80022 75-79 30.827998270590566 19.155664751001346 19.143628293386328 30.872708685021756 80-84 30.73331196695333 19.224185341743045 19.217428324097575 30.825074367206046 85-89 30.812692455482583 19.27675114020147 19.17948494869062 30.73107145562533 90-94 30.878221543911078 19.16355095817755 19.095635954781798 30.862591543129575 95-99 30.77865918030232 19.212453329422903 19.205571401106592 30.803316089168188 100-101 30.94654938227151 19.29628862803463 19.126153239873894 30.63100874981996 >>END_MODULE >>Per base GC content warn #Base %GC 1 57.99881082772649 2 54.35420727722929 3 57.23551418240056 4 60.05427589026522 5 60.780614443521856 6 62.61823278789008 7 61.96135451043521 8 60.92828555634843 9 62.17184580700107 10-14 61.349115950679945 15-19 61.587718631515465 20-24 61.51712596546008 25-29 61.528652318911206 30-34 61.75702828680907 35-39 61.59786867331177 40-44 61.65337169166516 45-49 61.798590850346294 50-54 61.649519316581916 55-59 61.60273547535453 60-64 61.7491104107653 65-69 61.618745 70-74 61.59405 75-79 61.700706955612326 80-84 61.55838633415938 85-89 61.54376391110791 90-94 61.74081308704066 95-99 61.581975269470504 100-101 61.57755813209147 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 16.0 1 21.5 2 23.5 3 22.0 4 23.5 5 25.0 6 31.5 7 45.5 8 57.0 9 75.0 10 102.0 11 138.5 12 163.0 13 202.5 14 272.5 15 345.0 16 445.5 17 536.0 18 634.5 19 776.5 20 972.5 21 1205.5 22 1494.0 23 1871.0 24 2329.5 25 2935.5 26 3560.5 27 4349.5 28 5427.0 29 6578.0 30 7813.0 31 9107.0 32 10438.5 33 12082.5 34 13659.0 35 15054.5 36 16430.5 37 17607.5 38 18950.5 39 20191.0 40 21184.5 41 22255.5 42 23267.5 43 24358.0 44 25686.5 45 27210.5 46 29351.0 47 32070.0 48 35530.5 49 39662.5 50 44963.0 51 51576.5 52 58708.5 53 66979.5 54 75650.0 55 85072.5 56 95659.0 57 106514.5 58 118152.0 59 130179.0 60 142150.0 61 154805.0 62 166868.0 63 177646.0 64 187082.5 65 194413.0 66 198789.0 67 199196.5 68 194971.0 69 186181.5 70 173037.5 71 156097.5 72 136849.0 73 115780.0 74 94070.5 75 73338.5 76 54739.0 77 38710.0 78 25707.0 79 16074.5 80 9352.5 81 5153.0 82 2820.5 83 1544.0 84 970.0 85 700.5 86 543.5 87 451.5 88 335.5 89 260.0 90 236.0 91 220.0 92 191.0 93 155.5 94 134.5 95 101.0 96 83.0 97 76.5 98 53.5 99 37.5 100 28.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.140625 2 0.105525 3 0.09625 4 0.08455 5 0.09985000000000001 6 0.15460000000000002 7 0.17205 8 0.186425 9 0.166025 10-14 0.111625 15-19 0.075305 20-24 0.06578 25-29 0.058699999999999995 30-34 0.093185 35-39 0.05474 40-44 0.044315 45-49 0.041135 50-54 0.05064 55-59 0.06417 60-64 1.95E-4 65-69 0.0 70-74 0.0 75-79 0.012110000000000001 80-84 0.029859999999999998 85-89 0.001225 90-94 4.9999999999999996E-6 95-99 0.028019999999999996 100-101 0.0208 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.338817038799054 #Duplication Level Relative count 1 100.0 2 0.276287419144562 3 0.0050142907285764425 4 0.002005716291430577 5 5.014290728576442E-4 6 0.0 7 0.0 8 5.014290728576442E-4 9 0.0 10++ 0.001504287218572933 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 380140 3.6630914 4.115513 60-64 TTTTT 372005 3.636909 3.947126 10-14 >>END_MODULE