##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L003_R2_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.57139425 34.0 31.0 34.0 31.0 34.0 2 32.73532225 34.0 31.0 34.0 31.0 34.0 3 32.7673875 34.0 31.0 34.0 31.0 34.0 4 36.142597 37.0 37.0 37.0 35.0 37.0 5 36.150214 37.0 37.0 37.0 35.0 37.0 6 36.140603 37.0 37.0 37.0 35.0 37.0 7 36.14480125 37.0 37.0 37.0 35.0 37.0 8 36.126899 37.0 37.0 37.0 35.0 37.0 9 37.89430375 39.0 39.0 39.0 37.0 39.0 10-14 38.17187975 39.4 39.2 39.4 35.4 39.4 15-19 39.347795049999995 41.0 40.0 41.0 37.0 41.0 20-24 39.147844899999996 41.0 39.2 41.0 36.0 41.0 25-29 38.76118145 40.4 38.6 41.0 35.0 41.0 30-34 38.10994505 40.0 37.4 41.0 34.0 41.0 35-39 37.1443315 39.0 35.2 41.0 32.8 41.0 40-44 36.186118050000005 37.0 35.0 40.0 32.0 41.0 45-49 35.2414714 35.0 35.0 39.0 31.0 41.0 50-54 33.89695215 34.8 33.4 36.2 29.0 39.8 55-59 34.12177145 35.0 35.0 35.2 31.0 39.2 60-64 33.771522749999995 35.0 34.8 35.0 30.8 37.2 65-69 33.432742000000005 35.0 34.0 35.0 30.0 36.0 70-74 33.1436809 35.0 34.0 35.0 29.4 35.0 75-79 32.84713824999999 35.0 33.6 35.0 29.0 35.0 80-84 32.5126867 35.0 33.0 35.0 27.8 35.0 85-89 32.194283999999996 35.0 33.0 35.0 27.0 35.0 90-94 31.815596999999997 35.0 33.0 35.0 25.8 35.0 95-99 31.257674149999996 35.0 33.0 35.0 23.8 35.0 100-101 30.199577375 34.0 31.5 35.0 19.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 10118.0 3 1573.0 4 1947.0 5 2123.0 6 2541.0 7 3106.0 8 3701.0 9 4022.0 10 4429.0 11 4719.0 12 4750.0 13 4748.0 14 4819.0 15 4954.0 16 5201.0 17 5685.0 18 6731.0 19 7522.0 20 8932.0 21 10593.0 22 12623.0 23 15391.0 24 18643.0 25 22918.0 26 28081.0 27 33986.0 28 42223.0 29 52826.0 30 65454.0 31 84357.0 32 112137.0 33 158623.0 34 259626.0 35 623705.0 36 1366389.0 37 753661.0 38 205688.0 39 41177.0 40 278.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.6245024983758 22.998712415059856 19.040497415183882 27.33628767138046 2 30.738776993716964 23.63070393386669 22.06444149924139 23.56607757317495 3 29.324700789062234 21.766189902949 21.03684210789979 27.872267200088967 4 31.191595777852637 20.48655627505319 19.42100128858395 28.900846658510225 5 30.7406839656905 19.832334927376362 19.41759318539091 30.009387921542224 6 30.19203982142866 19.055798785181967 18.34538517905969 32.40677621432969 7 32.067302237120835 18.925266242502165 19.142333065068197 29.865098455308807 8 29.647317173107563 19.306641060357656 19.814609721681663 31.23143204485312 9 30.436177534580334 18.30097787680215 19.54413669637732 31.7187078922402 10-14 30.57813989494283 19.258925906560094 19.412794992312556 30.750139206184524 15-19 30.653671135592614 19.141893345380108 19.317574958105382 30.886860560921896 20-24 30.642450388075787 19.1642898023489 19.323429045383705 30.869830764191608 25-29 30.688504416867605 19.251422941615214 19.27382697998566 30.786245661531513 30-34 30.78068653109532 19.131049160784592 19.16143076220731 30.92683354591278 35-39 30.699660145215457 19.179111822346258 19.23861380396939 30.882614228468896 40-44 30.78685672450109 19.201086307777267 19.201216382947706 30.810840584773942 45-49 30.85383324943968 19.09261388700541 19.12057843696075 30.932974426594157 50-54 30.732301558847197 19.17324976047038 19.22051787221362 30.873930808468803 55-59 30.773444806447397 19.225569429092264 19.21390037974449 30.787085384715844 60-64 30.80623249085083 19.15645482445138 19.14130974948326 30.89600293521453 65-69 30.73383 19.212305 19.218284999999998 30.83558 70-74 30.787142754999643 19.265142427998498 19.19340217690762 30.754312640094238 75-79 30.805428107392146 19.166889663098942 19.172570633692768 30.855111595816144 80-84 30.712290449004602 19.240461466214633 19.226781954027537 30.82046613075323 85-89 30.80835204899424 19.28701669556788 19.19156044986387 30.71307080557401 90-94 30.847379251901707 19.17319136110256 19.146650570186992 30.83277881680874 95-99 30.748527613823672 19.24205007488337 19.23076230599366 30.7786600052993 100-101 30.923398057245027 19.344989963186894 19.127001658821364 30.604610320746716 >>END_MODULE >>Per base GC content warn #Base %GC 1 57.96079016975626 2 54.30485456689191 3 57.196967989151204 4 60.09244243636286 5 60.75007188723273 6 62.59881603575834 7 61.93240069242963 8 60.87874921796068 9 62.15488542682053 10-14 61.32827910112736 15-19 61.54053169651451 20-24 61.51228115226739 25-29 61.47475007839912 30-34 61.707520077008105 35-39 61.582274373684356 40-44 61.597697309275034 45-49 61.78680767603384 50-54 61.606232367316 55-59 61.560530191163245 60-64 61.70223542606536 65-69 61.569410000000005 70-74 61.54145539509388 75-79 61.66053970320829 80-84 61.53275657975783 85-89 61.52142285456825 90-94 61.68015806871045 95-99 61.52718761912297 100-101 61.52800837799175 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 35.0 1 26.0 2 16.0 3 17.5 4 21.0 5 25.5 6 39.5 7 57.0 8 72.5 9 90.0 10 106.0 11 147.0 12 176.5 13 223.5 14 307.5 15 373.5 16 447.5 17 540.5 18 660.0 19 823.5 20 1013.5 21 1222.5 22 1479.5 23 1893.5 24 2391.5 25 2947.5 26 3669.5 27 4547.5 28 5504.0 29 6629.0 30 7937.0 31 9244.0 32 10733.5 33 12282.5 34 13696.5 35 15198.0 36 16664.0 37 17962.0 38 19295.0 39 20303.5 40 21343.5 41 22593.5 42 23572.0 43 24515.5 44 25859.0 45 27429.0 46 29645.0 47 32539.5 48 35714.0 49 39972.0 50 45356.5 51 51598.0 52 58973.5 53 66974.0 54 75393.0 55 84891.5 56 95381.0 57 106892.0 58 118135.5 59 129515.0 60 142158.5 61 154171.0 62 166115.0 63 177652.0 64 187093.0 65 194207.5 66 198475.5 67 198629.5 68 194423.5 69 185661.5 70 172940.5 71 156448.5 72 136703.0 73 115687.5 74 94236.0 75 73736.0 76 54723.0 77 38284.0 78 25369.0 79 15788.5 80 9122.0 81 4974.5 82 2669.0 83 1478.0 84 884.5 85 627.0 86 489.5 87 376.5 88 314.0 89 266.0 90 233.5 91 190.0 92 150.0 93 129.0 94 126.5 95 111.0 96 83.5 97 60.0 98 38.0 99 35.0 100 31.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.220175 2 0.195525 3 0.19165000000000001 4 0.18112499999999998 5 0.19090000000000001 6 0.17435 7 0.192025 8 0.18085 9 0.1817 10-14 0.139135 15-19 0.10053 20-24 0.07493000000000001 25-29 0.06266000000000001 30-34 0.10401500000000001 35-39 0.07055499999999999 40-44 0.05779 45-49 0.05203 50-54 0.048895 55-59 0.07755000000000001 60-64 4.95E-4 65-69 0.0 70-74 3.5E-4 75-79 0.017085 80-84 0.032985 85-89 0.001305 90-94 0.00298 95-99 0.02453 100-101 0.0118375 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.42909236225585917 #Duplication Level Relative count 1 100.0 2 0.3135488208055947 3 0.009531884152490079 4 0.0015050343398668546 5 0.0035117467930226606 6 0.002006712453155806 7 0.0015050343398668546 8 0.0 9 5.016781132889515E-4 10++ 0.0035117467930226606 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 379270 3.6454704 4.094483 60-64 TTTTT 373985 3.6371243 4.046886 10-14 >>END_MODULE