##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L003_R1_010.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 405015 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.42504104786242 34.0 31.0 34.0 31.0 34.0 2 32.7125834845623 34.0 31.0 34.0 31.0 34.0 3 32.76342851499327 34.0 31.0 34.0 31.0 34.0 4 36.26101749317927 37.0 37.0 37.0 35.0 37.0 5 36.15037220843672 37.0 37.0 37.0 35.0 37.0 6 36.115492018814116 37.0 36.0 37.0 35.0 37.0 7 36.08715232769157 37.0 36.0 37.0 35.0 37.0 8 36.08152784464773 37.0 36.0 37.0 35.0 37.0 9 37.83706282483365 39.0 38.0 39.0 35.0 39.0 10-14 38.082864091453395 39.4 38.2 39.4 35.2 39.4 15-19 39.06872091157118 40.0 38.8 41.0 35.6 41.0 20-24 38.934498722269545 40.0 38.2 41.0 35.0 41.0 25-29 38.434253052356084 40.0 38.0 41.0 34.0 41.0 30-34 37.73293779242744 39.8 36.6 41.0 33.0 41.0 35-39 36.68035653000506 38.4 35.0 40.2 31.6 41.0 40-44 34.58941965112403 36.0 33.6 39.6 25.8 40.8 45-49 33.85229830993914 35.0 32.4 38.2 25.2 40.8 50-54 31.252597558115134 34.4 28.6 35.6 19.6 39.0 55-59 32.968657457131215 35.0 32.6 35.0 26.2 38.4 60-64 32.76162512499537 35.0 33.0 35.0 26.4 36.6 65-69 32.784396133476534 35.0 33.0 35.0 27.6 35.6 70-74 32.43955507820698 35.0 33.0 35.0 26.4 35.0 75-79 31.78954902904831 34.4 32.2 35.0 26.0 35.0 80-84 31.952566201251805 35.0 33.0 35.0 26.6 35.0 85-89 31.65331012431638 35.0 32.6 35.0 24.8 35.0 90-94 31.284072935570286 34.6 32.0 35.0 24.0 35.0 95-99 30.74597286520252 34.0 31.4 35.0 22.8 35.0 100-101 28.992669407305904 33.0 29.0 34.5 10.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 1.0 4 4.0 5 12.0 6 39.0 7 117.0 8 263.0 9 395.0 10 536.0 11 656.0 12 721.0 13 793.0 14 790.0 15 743.0 16 788.0 17 822.0 18 870.0 19 937.0 20 1069.0 21 1215.0 22 1459.0 23 1800.0 24 2477.0 25 3064.0 26 4111.0 27 5069.0 28 6670.0 29 8010.0 30 10201.0 31 13114.0 32 17414.0 33 25152.0 34 43490.0 35 89115.0 36 111212.0 37 41401.0 38 9623.0 39 862.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.23783062902867 22.811982909782422 19.5860808574745 27.364105603714407 2 30.27517499351876 23.071984988210314 23.01766601236991 23.635174005901018 3 28.469069046825425 22.066837030727257 22.122143624310212 27.341950298137107 4 30.57195412515586 20.827129859387924 20.387146155080675 28.213769860375542 5 30.81416737651692 19.70198634618471 19.630877868720912 29.852968408577464 6 30.0349369776428 19.263977877362567 18.66054343666284 32.04054170833179 7 31.7968470303569 19.01336987518981 19.26644692171895 29.923336172734345 8 29.706060269372742 19.381998197597618 19.680999469155463 31.230942063874178 9 30.34430823549745 18.467957976865055 19.738034393787885 31.449699393849613 10-14 30.55521400441959 19.288125131167984 19.48080935274002 30.67585151167241 15-19 30.61837215905584 19.196572966433344 19.365554362184117 30.8195005123267 20-24 30.554818957322567 19.226695307581203 19.40204683777144 30.816438897324787 25-29 30.705486602253192 19.243452728387854 19.35564793224042 30.695412737118538 30-34 30.768090688975956 19.164844090034876 19.203576416558267 30.8634888044309 35-39 30.724887508088056 19.18008090526971 19.303167554912353 30.791864031729883 40-44 31.552631838879506 19.196619946464377 19.071917503778113 30.178830710878003 45-49 31.628853252348677 19.513351357357134 18.923743565053147 29.934051825241042 50-54 31.41335506092367 19.619767169117193 19.144673654062196 29.822204115896945 55-59 30.772360794863935 19.23215760985773 19.203368211467268 30.792113383811078 60-64 30.84366578949448 19.27580940865951 19.119192685490308 30.761332116355707 65-69 30.670163299675774 19.232617461928434 19.29336405234084 30.803855186054953 70-74 30.75960149624088 19.26807649099416 19.226497784032688 30.74582422873227 75-79 30.826315074750315 19.19509153981951 19.185709171265263 30.792884214164907 80-84 30.70692994403068 19.269909996750677 19.23410819945107 30.789051859767568 85-89 30.76502527135719 19.309104701549074 19.27132360276607 30.654546424327666 90-94 30.82707695225264 19.251940622243644 19.18749191304511 30.7334905124586 95-99 30.72143688871638 19.249378531408237 19.29441463436314 30.73476994551224 100-101 31.021937459106454 19.211016875918176 19.140031850672198 30.627013814303172 >>END_MODULE >>Per base GC content warn #Base %GC 1 57.60193623274308 2 53.910348999419774 3 55.81101934496253 4 58.785723985531405 5 60.66713578509438 6 62.075478685974595 7 61.72018320309124 8 60.937002333246916 9 61.79400762934706 10-14 61.231065516091995 15-19 61.43787267138254 20-24 61.371257854647354 25-29 61.400899339371726 30-34 61.63157949340686 35-39 61.51675153981794 40-44 61.73146254975751 45-49 61.56290507758971 50-54 61.23555917682061 55-59 61.56447417867501 60-64 61.60499790585019 65-69 61.47401848573072 70-74 61.50542572497315 75-79 61.619199288915226 80-84 61.49598180379825 85-89 61.41957169568486 90-94 61.56056746471125 95-99 61.456206834228624 100-101 61.64895127340962 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.5 2 1.0 3 1.0 4 1.0 5 0.5 6 1.0 7 4.0 8 5.0 9 3.5 10 3.5 11 7.0 12 12.0 13 15.0 14 16.5 15 21.0 16 26.0 17 32.0 18 46.5 19 61.0 20 80.0 21 98.0 22 126.5 23 169.0 24 216.5 25 265.0 26 332.0 27 435.0 28 537.5 29 659.0 30 790.0 31 897.5 32 1021.5 33 1219.5 34 1387.0 35 1520.5 36 1671.5 37 1744.0 38 1853.0 39 1991.0 40 2130.0 41 2289.0 42 2404.5 43 2489.5 44 2633.0 45 2854.0 46 3025.5 47 3260.5 48 3681.5 49 4190.0 50 4722.0 51 5425.5 52 6222.0 53 6985.0 54 7856.0 55 8756.5 56 9778.0 57 10999.0 58 12181.0 59 13503.5 60 14755.5 61 15953.5 62 17139.5 63 18212.5 64 19183.5 65 19883.5 66 20247.0 67 20165.5 68 19637.5 69 18715.5 70 17491.5 71 15699.5 72 13552.0 73 11297.0 74 9067.5 75 7057.5 76 5242.0 77 3656.5 78 2335.5 79 1408.0 80 794.5 81 395.0 82 195.5 83 104.5 84 62.5 85 33.5 86 24.0 87 15.5 88 9.0 89 7.0 90 4.0 91 3.5 92 2.5 93 1.5 94 1.0 95 1.0 96 1.5 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.025924965742009556 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.0 25-29 0.0016295692752120291 30-34 0.04572670148019209 35-39 0.023949730256904066 40-44 0.0125921262175475 45-49 0.0 50-54 0.0 55-59 0.001185141291063294 60-64 0.019110403318395613 65-69 0.013332839524462058 70-74 0.0 75-79 0.0 80-84 0.0018270928237225782 85-89 0.012493364443292224 90-94 0.010320605409676185 95-99 0.0016295692752120291 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 405015.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.039493088709485764 #Duplication Level Relative count 1 100.0 2 0.02050451099241833 3 5.001100242053251E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0010002200484106503 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 37935 3.5387232 4.2797318 65-69 TTTTT 36820 3.4737136 4.227639 90-94 >>END_MODULE