##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L003_R1_008.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.67360125 34.0 31.0 34.0 31.0 34.0 2 32.93255975 34.0 31.0 34.0 31.0 34.0 3 32.9805305 34.0 31.0 34.0 31.0 34.0 4 36.404412 37.0 37.0 37.0 35.0 37.0 5 36.3306505 37.0 37.0 37.0 35.0 37.0 6 36.298475 37.0 37.0 37.0 35.0 37.0 7 36.28429875 37.0 37.0 37.0 35.0 37.0 8 36.27451475 37.0 37.0 37.0 35.0 37.0 9 38.04636225 39.0 38.0 39.0 35.0 39.0 10-14 38.310832749999996 39.4 38.4 39.4 35.4 39.4 15-19 39.42713545 41.0 39.2 41.0 36.4 41.0 20-24 39.020158599999995 40.4 38.8 41.0 35.4 41.0 25-29 32.39185785 31.0 26.6 40.4 23.4 41.0 30-34 34.60647695 37.8 33.4 40.0 21.0 41.0 35-39 36.1921076 37.8 35.0 40.0 30.6 41.0 40-44 34.0340284 36.0 33.8 39.6 20.4 41.0 45-49 34.32322955 35.0 33.6 38.4 28.0 41.0 50-54 32.7272815 35.0 31.8 36.0 22.2 39.6 55-59 33.3241783 35.0 33.0 35.0 27.8 38.8 60-64 32.1719675 35.0 32.4 35.0 23.4 36.4 65-69 32.7778267 35.0 33.0 35.0 28.2 35.6 70-74 31.19822235 35.0 31.6 35.0 20.6 35.0 75-79 31.729432100000004 34.4 32.4 35.0 25.6 35.0 80-84 31.07004865 35.0 31.6 35.0 21.8 35.0 85-89 31.18803845 35.0 32.0 35.0 22.4 35.0 90-94 31.01052545 35.0 32.0 35.0 23.6 35.0 95-99 30.475556649999998 34.6 31.4 35.0 19.8 35.0 100-101 28.908865125 33.5 29.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 24.0 3 19.0 4 39.0 5 135.0 6 516.0 7 1769.0 8 4920.0 9 6132.0 10 5812.0 11 7124.0 12 7406.0 13 7350.0 14 7515.0 15 8033.0 16 8531.0 17 9452.0 18 10143.0 19 11233.0 20 12203.0 21 13974.0 22 17133.0 23 21407.0 24 27398.0 25 34146.0 26 43393.0 27 54932.0 28 68960.0 29 87296.0 30 113924.0 31 156447.0 32 240538.0 33 403468.0 34 625808.0 35 843342.0 36 759623.0 37 296680.0 38 74803.0 39 8341.0 40 31.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.424162808269628 22.61926609862928 19.422193063036346 27.534378030064744 2 30.426474999999996 22.989825 22.850575 23.733125 3 28.6844 21.787799999999997 22.039875000000002 27.487925 4 30.6304 20.69955 20.229725000000002 28.440325 5 30.8176 19.717275 19.549 29.916124999999997 6 30.058600000000002 19.247700000000002 18.6617 32.032 7 31.88615 19.069074999999998 19.243575 29.8012 8 29.716575 19.301075 19.74265 31.2397 9 30.27835 18.453049999999998 19.772825 31.495775 10-14 30.56025 19.30067 19.455655 30.683424999999996 15-19 30.617179999999998 19.20571 19.35262 30.824489999999997 20-24 30.64481741433425 19.22274565208652 19.33678731709483 30.7956496164844 25-29 36.217880982822756 17.84912522148136 17.632244434285983 28.300749361409906 30-34 31.828107745138805 19.170245545353062 18.813973863802964 30.187672845705173 35-39 30.893885308859076 19.192215298684257 19.227521824499608 30.686377567957056 40-44 30.926774654010398 19.17746690930475 19.279205775254095 30.616552661430756 45-49 31.007810000000003 19.248655 19.10015 30.643385000000002 50-54 31.217063441645877 19.34557966417667 19.103505101071157 30.333851793106298 55-59 30.821345952670885 19.22928959925663 19.201699298522353 30.74766514955013 60-64 30.997891651041158 19.2767099092201 19.099317686437274 30.626080753301466 65-69 30.76716781397681 19.20847954172815 19.241719975900434 30.782632668394612 70-74 31.06765 19.365285 19.11981 30.447255000000002 75-79 30.939055 19.156705 19.140065 30.764174999999998 80-84 30.900975204987553 19.2186659739787 19.240946659109767 30.63941216192398 85-89 30.89345454232649 19.2950276159095 19.17716312621418 30.634354715549833 90-94 30.889080361974163 19.138780272429987 19.158597836794307 30.81354152880154 95-99 30.86083422244272 19.168891648525303 19.209507838579672 30.760766290452313 100-101 31.1987875 19.1179375 19.042975000000002 30.640299999999996 >>END_MODULE >>Per base GC content warn #Base %GC 1 57.95854083833437 2 54.1596 3 56.172325 4 59.070725 5 60.73372500000001 6 62.090599999999995 7 61.687349999999995 8 60.956275000000005 9 61.774125000000005 10-14 61.243674999999996 15-19 61.44167 20-24 61.440467030818645 25-29 64.51863034423266 30-34 62.015780590843974 35-39 61.580262876816136 40-44 61.543327315441154 45-49 61.651195 50-54 61.55091523475218 55-59 61.56901110222102 60-64 61.62397240434263 65-69 61.54980048237142 70-74 61.514905 75-79 61.70323 80-84 61.54038736691153 85-89 61.52780925787632 90-94 61.70262189077571 95-99 61.62160051289503 100-101 61.8390875 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5.0 1 8.0 2 12.0 3 14.5 4 17.0 5 18.0 6 17.5 7 24.5 8 31.0 9 36.5 10 43.5 11 57.5 12 72.5 13 98.0 14 137.0 15 188.5 16 252.0 17 314.5 18 394.0 19 520.0 20 693.5 21 886.5 22 1177.0 23 1522.0 24 1945.5 25 2482.0 26 3125.5 27 3931.5 28 4854.5 29 5849.0 30 6993.5 31 8385.5 32 9927.5 33 11438.5 34 12983.0 35 14581.0 36 16022.0 37 17424.0 38 18850.0 39 20113.5 40 21133.0 41 22176.5 42 23403.0 43 24383.5 44 25622.0 45 27521.5 46 29580.5 47 32309.0 48 35888.0 49 40179.5 50 45795.0 51 52115.0 52 59128.5 53 67221.5 54 76389.0 55 86424.5 56 97000.5 57 107861.0 58 119283.5 59 131447.5 60 143852.0 61 156181.5 62 168311.0 63 179676.5 64 189127.5 65 195941.0 66 199742.0 67 199714.0 68 195238.5 69 186122.5 70 172796.5 71 155224.5 72 135489.5 73 114487.5 74 92659.5 75 72078.0 76 53312.0 77 37498.5 78 24938.0 79 15592.5 80 9113.5 81 5076.5 82 2748.5 83 1594.5 84 989.5 85 655.0 86 463.0 87 309.5 88 230.5 89 176.0 90 127.5 91 87.5 92 53.5 93 34.5 94 24.0 95 12.5 96 7.0 97 4.0 98 2.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.01245 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.0014600000000000001 25-29 0.039555 30-34 0.07345 35-39 0.032645 40-44 2.205515 45-49 0.0 50-54 0.0018850000000000002 55-59 0.00109 60-64 0.037895000000000005 65-69 0.03139 70-74 0.0 75-79 0.0 80-84 0.003075 85-89 0.02502 90-94 0.03817 95-99 0.00293 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.10397764480636688 #Duplication Level Relative count 1 100.0 2 0.07356068756724297 3 0.002502064202967448 4 0.0015012385217804689 5 0.0010008256811869793 6 5.004128405934897E-4 7 5.004128405934897E-4 8 5.004128405934897E-4 9 5.004128405934897E-4 10++ 0.0020016513623739587 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 358400 3.4998631 4.1775484 70-74 TTTTT 349025 3.474951 4.059091 95-97 >>END_MODULE