##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L003_R1_006.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.70882575 34.0 31.0 34.0 31.0 34.0 2 32.9554475 34.0 31.0 34.0 31.0 34.0 3 32.99613275 34.0 31.0 34.0 31.0 34.0 4 36.41166125 37.0 37.0 37.0 35.0 37.0 5 36.339654 37.0 37.0 37.0 35.0 37.0 6 36.30650875 37.0 37.0 37.0 35.0 37.0 7 36.30183775 37.0 37.0 37.0 35.0 37.0 8 36.2890175 37.0 37.0 37.0 35.0 37.0 9 38.078969 39.0 38.0 39.0 37.0 39.0 10-14 38.35367505 39.4 38.4 39.4 35.8 39.4 15-19 39.5014682 41.0 39.8 41.0 37.0 41.0 20-24 39.269331900000005 40.8 39.0 41.0 35.8 41.0 25-29 38.61172775000001 40.0 38.4 41.0 34.4 41.0 30-34 37.44796255 39.8 36.6 41.0 32.0 41.0 35-39 37.0306371 38.6 35.0 40.6 32.6 41.0 40-44 36.1290603 36.8 35.0 40.0 31.8 41.0 45-49 35.51067975 35.0 35.0 39.0 31.8 41.0 50-54 34.5069145 35.0 34.6 36.6 30.4 40.4 55-59 33.980300750000005 35.0 34.0 35.0 30.0 39.0 60-64 33.47289695 35.0 34.0 35.0 29.6 37.0 65-69 33.27970535 35.0 33.4 35.0 29.6 35.8 70-74 32.70986094999999 35.0 33.0 35.0 27.8 35.0 75-79 32.387679500000004 34.8 32.6 35.0 28.2 35.0 80-84 32.4265819 35.0 33.0 35.0 27.4 35.0 85-89 32.03212595 35.0 33.0 35.0 25.8 35.0 90-94 31.794838650000003 35.0 33.0 35.0 26.2 35.0 95-99 31.370230600000003 35.0 33.0 35.0 24.4 35.0 100-101 30.157079375000002 34.0 31.0 35.0 21.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 32.0 3 10.0 4 22.0 5 109.0 6 330.0 7 867.0 8 2115.0 9 3582.0 10 4565.0 11 5078.0 12 5276.0 13 5259.0 14 5511.0 15 5843.0 16 6284.0 17 7036.0 18 7704.0 19 8388.0 20 8982.0 21 9954.0 22 11762.0 23 14550.0 24 18443.0 25 23355.0 26 29659.0 27 37316.0 28 47491.0 29 59162.0 30 74953.0 31 96233.0 32 128273.0 33 184065.0 34 308288.0 35 699444.0 36 1330000.0 37 654725.0 38 170337.0 39 24933.0 40 64.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.437955529176993 22.61634783634813 19.38762678189676 27.558069852578114 2 30.50453428854145 22.88959456155377 22.835544102124867 23.770327047779908 3 28.628874999999997 21.839875 22.010775 27.520475 4 30.616597519709693 20.727736825723415 20.226553681497325 28.42911197306956 5 30.851774999999996 19.730249999999998 19.532975 29.885 6 30.011074999999998 19.221474999999998 18.6756 32.09185 7 31.873849999999997 19.098825 19.235374999999998 29.79195 8 29.697574999999997 19.303224999999998 19.77555 31.223649999999996 9 30.259725 18.448725 19.7963 31.495250000000002 10-14 30.562060000000002 19.290355 19.451635 30.69595 15-19 30.601329999999997 19.206300000000002 19.364795 30.827575000000003 20-24 30.621808586064752 19.217404452334318 19.382866470970946 30.777920490629985 25-29 30.930400477642557 19.22127283380966 19.24990298698098 30.5984237015668 30-34 31.248951294541527 19.167894429566765 19.11036758846021 30.47278668743149 35-39 30.682946196644522 19.24497155893238 19.299617736808063 30.772464507615034 40-44 30.793502215721936 19.262067715462553 19.22319601482565 30.72123405398986 45-49 30.834905000000003 19.18105 19.193305 30.79074 50-54 30.866879080509797 19.248351196042872 19.233061159346782 30.651708564100556 55-59 30.7844 19.242945 19.221095 30.75156 60-64 30.832916898137626 19.17975243321422 19.17724207034127 30.810088598306884 65-69 30.736125390545304 19.255548643642662 19.26539978637522 30.742926179436814 70-74 30.88014 19.34298 19.195865 30.581015 75-79 30.794864999999998 19.21997 19.19159 30.793575 80-84 30.762621062301715 19.284452089661443 19.271791914318012 30.681134933718834 85-89 30.83232408895485 19.33539382532455 19.2402264974403 30.5920555882803 90-94 30.824665177103533 19.170371446115954 19.207067928549577 30.79789544823093 95-99 30.786962476143525 19.226867655242724 19.239612776321373 30.746557092292377 100-101 31.008775 19.232525 19.148075000000002 30.610625000000002 >>END_MODULE >>Per base GC content warn #Base %GC 1 57.99602538175511 2 54.27486133632136 3 56.14935 4 59.04570949277925 5 60.736775 6 62.102925 7 61.665800000000004 8 60.921225 9 61.754975 10-14 61.25801 15-19 61.428905 20-24 61.39972907669473 25-29 61.528824179209366 30-34 61.72173798197302 35-39 61.45541070425956 40-44 61.514736269711804 45-49 61.625645 50-54 61.51858764461034 55-59 61.53596 60-64 61.643005496444516 65-69 61.47905156998211 70-74 61.461155 75-79 61.58844 80-84 61.44375599602054 85-89 61.42437967723515 90-94 61.622560625334465 95-99 61.5335195684359 100-101 61.6194 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 31.0 1 21.5 2 13.0 3 13.5 4 14.5 5 16.0 6 20.0 7 29.0 8 40.5 9 54.5 10 70.5 11 89.5 12 111.0 13 140.0 14 182.5 15 235.0 16 315.0 17 416.0 18 502.0 19 622.5 20 838.0 21 1078.5 22 1378.0 23 1778.0 24 2247.5 25 2791.0 26 3498.0 27 4377.5 28 5341.5 29 6452.5 30 7742.5 31 9127.5 32 10543.0 33 12043.5 34 13579.0 35 14974.5 36 16557.5 37 18121.0 38 19256.0 39 20382.5 40 21432.0 41 22464.5 42 23480.5 43 24486.5 44 25812.0 45 27528.5 46 29851.5 47 32862.0 48 36556.0 49 40986.0 50 46169.0 51 52510.0 52 60042.0 53 68264.0 54 77251.5 55 86950.0 56 97006.5 57 107965.5 58 119272.0 59 130962.5 60 143232.0 61 155495.0 62 167701.5 63 178989.0 64 188160.0 65 195046.5 66 199090.5 67 198874.5 68 194041.0 69 184996.5 70 171619.0 71 154661.5 72 135137.5 73 113822.5 74 92268.5 75 71532.5 76 52841.5 77 37156.0 78 24513.0 79 14908.5 80 8454.0 81 4541.0 82 2338.5 83 1222.0 84 733.5 85 471.5 86 341.5 87 258.0 88 192.0 89 143.0 90 107.0 91 80.5 92 54.0 93 39.0 94 26.0 95 14.5 96 8.5 97 3.0 98 2.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.002975 2 8.5E-4 3 0.0 4 0.001625 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.00122 25-29 5.35E-4 30-34 0.055349999999999996 35-39 0.020455 40-44 0.0043749999999999995 45-49 0.0 50-54 2.3999999999999998E-4 55-59 0.0 60-64 0.014454999999999999 65-69 0.0116 70-74 0.0 75-79 0.0 80-84 0.001385 85-89 0.0077 90-94 0.017665 95-99 9.500000000000001E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.27141586108305493 #Duplication Level Relative count 1 100.0 2 0.22804845653797381 3 0.00701687558578381 4 0.0015036161969536736 5 0.0015036161969536736 6 5.012053989845579E-4 7 5.012053989845579E-4 8 0.0010024107979691157 9 0.0 10++ 0.0010024107979691157 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 390435 3.714521 4.3191104 70-74 TTTTT 382020 3.6529472 4.151645 95-97 >>END_MODULE