##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L003_R1_005.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.778383 34.0 31.0 34.0 31.0 34.0 2 33.0143605 34.0 31.0 34.0 31.0 34.0 3 33.053503 34.0 31.0 34.0 31.0 34.0 4 36.45073375 37.0 37.0 37.0 35.0 37.0 5 36.38821175 37.0 37.0 37.0 35.0 37.0 6 36.355607 37.0 37.0 37.0 35.0 37.0 7 36.35055625 37.0 37.0 37.0 35.0 37.0 8 36.3337205 37.0 37.0 37.0 35.0 37.0 9 38.12563225 39.0 39.0 39.0 37.0 39.0 10-14 38.399830849999994 39.4 38.6 39.4 37.0 39.4 15-19 39.54329525 41.0 40.0 41.0 37.0 41.0 20-24 39.30338214999999 40.8 39.0 41.0 36.0 41.0 25-29 38.8816255 40.0 38.4 41.0 35.0 41.0 30-34 38.14221905000001 40.0 37.2 41.0 33.8 41.0 35-39 37.140803399999996 38.6 35.2 40.6 32.8 41.0 40-44 36.16169015 37.0 35.0 40.0 31.8 41.0 45-49 35.57996445 35.2 35.0 39.2 32.0 41.0 50-54 34.7477454 35.0 35.0 37.0 31.0 40.4 55-59 34.12208965 35.0 34.0 35.2 30.8 39.2 60-64 33.628503300000006 35.0 34.0 35.0 30.0 37.2 65-69 33.23589084999999 35.0 33.2 35.0 29.2 35.8 70-74 32.91016465 35.0 33.0 35.0 29.0 35.0 75-79 32.2591408 34.4 32.6 35.0 27.4 35.0 80-84 32.434143899999995 35.0 33.0 35.0 27.6 35.0 85-89 32.1137269 35.0 33.0 35.0 27.0 35.0 90-94 31.695905149999998 35.0 33.0 35.0 25.8 35.0 95-99 31.143237149999997 35.0 32.8 35.0 23.8 35.0 100-101 29.825838375 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 33.0 3 5.0 4 31.0 5 105.0 6 297.0 7 827.0 8 1959.0 9 3279.0 10 4107.0 11 4779.0 12 5126.0 13 5186.0 14 5529.0 15 5664.0 16 6466.0 17 7134.0 18 7778.0 19 8390.0 20 9237.0 21 10289.0 22 12161.0 23 14876.0 24 18708.0 25 23186.0 26 29135.0 27 36376.0 28 45965.0 29 57218.0 30 71494.0 31 92141.0 32 121221.0 33 169523.0 34 277806.0 35 678781.0 36 1369110.0 37 684379.0 38 184342.0 39 27286.0 40 71.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.413606323908276 22.57560346758837 19.370594506584737 27.640195701918614 2 30.4842 22.926099999999998 22.775175 23.814525 3 28.712875 21.753800000000002 21.990125 27.543200000000002 4 30.653424375336257 20.65535441779719 20.233220130842877 28.45800107602367 5 30.818675000000002 19.73055 19.523575 29.9272 6 30.051 19.198974999999997 18.670375 32.07965 7 31.891925 19.067 19.24645 29.794625000000003 8 29.7039 19.305 19.786424999999998 31.204674999999998 9 30.28045 18.400775 19.771975 31.5468 10-14 30.581455000000002 19.278545 19.455225000000002 30.684775 15-19 30.613384999999997 19.207125 19.349359999999997 30.83013 20-24 30.597953447664473 19.217463635925448 19.368741026108214 30.815841890301865 25-29 30.713767249455614 19.261000224050235 19.305620270901283 30.71961225559287 30-34 30.74357703061392 19.169751948909965 19.230257094848618 30.85641392562749 35-39 30.698681940044796 19.23457220671167 19.29385962653226 30.77288622671127 40-44 30.775901983117848 19.225653030877275 19.24251318261864 30.755931803386233 45-49 30.803005 19.133834999999998 19.19829 30.86487 50-54 30.733825 19.20915 19.258255 30.798769999999998 55-59 30.798783118296363 19.19926187896663 19.222461911446675 30.779493091290327 60-64 30.800610971142323 19.14619988863516 19.189358390772554 30.863830749449967 65-69 30.72818770599433 19.22056126478418 19.243721248812744 30.807529780408743 70-74 30.802685 19.255255 19.19573 30.74633 75-79 30.805905 19.166285 19.197245 30.830565 80-84 30.748019946611898 19.220981913276507 19.25130753950069 30.779690600610905 85-89 30.836997024619393 19.232392513981807 19.20717132091785 30.723439140480945 90-94 30.868903651314568 19.135412772673703 19.171804778396393 30.823878797615333 95-99 30.81342324001255 19.18903183314863 19.209937456136192 30.78760747070263 100-101 31.10636803184016 19.185108425542126 19.0719828599143 30.636540682703412 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.0538020258269 2 54.298725000000005 3 56.256075 4 59.111425451359935 5 60.745875000000005 6 62.130649999999996 7 61.68655 8 60.908575 9 61.82725 10-14 61.26623 15-19 61.443515000000005 20-24 61.413795337966334 25-29 61.43337950504848 30-34 61.59999095624141 35-39 61.47156816675607 40-44 61.53183378650407 45-49 61.667875 50-54 61.532595 55-59 61.57827620958669 60-64 61.664441720592286 65-69 61.53571748640307 70-74 61.549015 75-79 61.636469999999996 80-84 61.5277105472228 85-89 61.56043616510034 90-94 61.692782448929904 95-99 61.60103071071518 100-101 61.742908714543574 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 22.0 1 14.5 2 8.0 3 8.0 4 9.0 5 17.5 6 26.5 7 30.0 8 35.0 9 44.5 10 58.5 11 70.0 12 94.0 13 120.5 14 151.5 15 207.0 16 274.0 17 379.0 18 473.0 19 603.0 20 820.5 21 1076.5 22 1364.0 23 1701.5 24 2169.5 25 2800.0 26 3572.0 27 4392.0 28 5310.0 29 6390.5 30 7738.5 31 9275.5 32 10781.5 33 12270.0 34 13768.5 35 15117.0 36 16363.0 37 17692.5 38 19105.5 39 20332.5 40 21368.5 41 22517.0 42 23725.5 43 24692.0 44 26010.5 45 27791.0 46 29726.5 47 32762.5 48 36457.0 49 40704.0 50 46060.5 51 52410.0 52 59562.0 53 68018.5 54 77425.0 55 86853.5 56 96715.5 57 107795.0 58 119534.5 59 131283.0 60 143049.0 61 154788.0 62 166881.0 63 178042.0 64 186968.5 65 193805.5 66 198093.5 67 198073.5 68 193567.0 69 184860.5 70 171968.0 71 155271.0 72 135512.5 73 114257.5 74 92812.5 75 72407.5 76 53934.0 77 38071.0 78 25244.0 79 15571.5 80 9025.0 81 4957.0 82 2603.0 83 1418.0 84 845.5 85 559.0 86 379.0 87 275.0 88 193.5 89 139.0 90 109.0 91 73.5 92 52.0 93 36.5 94 31.0 95 19.5 96 10.5 97 5.0 98 2.0 99 1.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0112 2 0.0 3 0.0 4 0.0022 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.00158 25-29 1.0499999999999999E-4 30-34 0.04156 35-39 0.012515 40-44 9.0E-4 45-49 0.0 50-54 0.0 55-59 1.4E-4 60-64 0.031285 65-69 0.02152 70-74 0.0 75-79 0.0 80-84 0.002065 85-89 0.024554999999999997 90-94 0.03299 95-99 0.00298 100-101 5.0E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.2888988853901159 #Duplication Level Relative count 1 100.0 2 0.24261624526296793 3 0.0060152788081727585 4 0.0015038197020431896 5 0.0015038197020431896 6 5.012732340143966E-4 7 5.012732340143966E-4 8 0.0 9 5.012732340143966E-4 10++ 0.0015038197020431896 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 374990 3.6062148 4.1307178 70-74 TTTTT 367965 3.5242712 3.7730331 10-14 >>END_MODULE