##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L003_R1_004.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.84523125 34.0 31.0 34.0 31.0 34.0 2 33.0769465 34.0 31.0 34.0 31.0 34.0 3 33.109792 34.0 33.0 34.0 31.0 34.0 4 36.48528225 37.0 37.0 37.0 35.0 37.0 5 36.42905525 37.0 37.0 37.0 35.0 37.0 6 36.39468625 37.0 37.0 37.0 35.0 37.0 7 36.3886265 37.0 37.0 37.0 35.0 37.0 8 36.374179 37.0 37.0 37.0 35.0 37.0 9 38.166868 39.0 39.0 39.0 37.0 39.0 10-14 38.43486779999999 39.4 39.0 39.4 37.0 39.4 15-19 39.586718950000005 41.0 40.0 41.0 37.0 41.0 20-24 39.359928149999995 40.8 39.0 41.0 36.4 41.0 25-29 38.924875 40.0 38.4 41.0 35.2 41.0 30-34 38.184585750000004 40.0 37.2 41.0 34.0 41.0 35-39 37.178655549999995 38.6 35.2 40.6 32.8 41.0 40-44 36.21497255 37.0 35.0 40.0 32.0 41.0 45-49 35.656035100000004 35.2 35.0 39.2 32.6 41.0 50-54 34.8223234 35.0 35.0 37.0 31.4 40.4 55-59 34.183135549999996 35.0 34.4 35.2 31.0 39.2 60-64 33.66076865 35.0 34.0 35.0 30.2 37.2 65-69 33.25144725 35.0 33.2 35.0 29.4 35.8 70-74 32.9455648 35.0 33.0 35.0 29.0 35.0 75-79 32.274677600000004 34.4 32.6 35.0 27.4 35.0 80-84 32.4780304 35.0 33.0 35.0 28.2 35.0 85-89 32.15815164999999 35.0 33.0 35.0 27.0 35.0 90-94 31.678233499999997 35.0 33.0 35.0 25.6 35.0 95-99 31.133729200000005 35.0 33.0 35.0 23.8 35.0 100-101 29.7981625 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 20.0 3 12.0 4 39.0 5 99.0 6 260.0 7 875.0 8 1961.0 9 3096.0 10 3988.0 11 4589.0 12 4811.0 13 4964.0 14 5298.0 15 5824.0 16 6364.0 17 7081.0 18 7713.0 19 8376.0 20 8955.0 21 10108.0 22 12009.0 23 14542.0 24 18412.0 25 22904.0 26 28764.0 27 35695.0 28 44308.0 29 55310.0 30 69246.0 31 88441.0 32 118393.0 33 166604.0 34 277060.0 35 683869.0 36 1376273.0 37 688056.0 38 187721.0 39 27885.0 40 75.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.420534462025394 22.63665932483481 19.355010487735974 27.587795725403826 2 30.44635 22.9568 22.77375 23.8231 3 28.692099999999996 21.7611 21.98915 27.55765 4 30.673275 20.62995 20.204825 28.49195 5 30.877850000000002 19.7229 19.51675 29.8825 6 30.053 19.247875 18.6479 32.051225 7 31.932775000000003 19.0379 19.2178 29.811525 8 29.706149999999997 19.245725 19.782625 31.265500000000003 9 30.304575 18.3961 19.76525 31.534075 10-14 30.57029 19.27599 19.446884999999998 30.706834999999998 15-19 30.626379999999997 19.193965 19.355645 30.82401 20-24 30.61550260184059 19.201579544640897 19.367902139273372 30.815015714245142 25-29 30.727915754770514 19.25231673831086 19.284966749738363 30.734800757180263 30-34 30.746652215263552 19.16276059478494 19.213042074539928 30.877545115411575 35-39 30.708457826074476 19.19185797722084 19.275176484930014 30.824507711774668 40-44 30.796042318416927 19.202217680887074 19.224367689747076 30.777372310948927 45-49 30.802574999999997 19.12689 19.18771 30.882825000000004 50-54 30.743094999999997 19.180844999999998 19.243299999999998 30.832759999999997 55-59 30.788919999999997 19.218165000000003 19.21957 30.773345000000003 60-64 30.81512253209977 19.10864306566104 19.185730436734552 30.89050396550464 65-69 30.757057699021562 19.177604628806197 19.251725348696 30.813612323476246 70-74 30.833515 19.2145 19.188785 30.7632 75-79 30.835655 19.14838 19.152145 30.863819999999997 80-84 30.767429887624985 19.206683497050218 19.22714477383389 30.798741841490905 85-89 30.858812106150175 19.212703043545904 19.191062407173128 30.737422443130797 90-94 30.87570709224041 19.11559111908304 19.168492191376522 30.840209597300028 95-99 30.827143393931383 19.166940787910967 19.214272333863775 30.79164348429388 100-101 31.126308951162784 19.155891113063657 19.037875972474886 30.679923963298677 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.008330187429216 2 54.26945 3 56.24975 4 59.165225 5 60.760349999999995 6 62.104225 7 61.744299999999996 8 60.97165 9 61.838649999999994 10-14 61.277125 15-19 61.45039 20-24 61.43051831608574 25-29 61.462716511950774 30-34 61.62419733067512 35-39 61.53296553784914 40-44 61.57341462936585 45-49 61.6854 50-54 61.575855000000004 55-59 61.562265000000004 60-64 61.705626497604406 65-69 61.57067002249781 70-74 61.596715 75-79 61.69947500000001 80-84 61.566171729115894 85-89 61.59623454928097 90-94 61.71591668954044 95-99 61.618786878225265 100-101 61.806232914461454 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 23.0 1 16.5 2 9.5 3 8.0 4 8.5 5 15.0 6 21.5 7 21.5 8 29.5 9 39.0 10 50.5 11 70.5 12 94.5 13 119.5 14 154.5 15 210.5 16 278.5 17 364.0 18 479.0 19 591.5 20 793.0 21 1060.0 22 1331.5 23 1711.0 24 2180.0 25 2831.0 26 3608.5 27 4339.0 28 5265.0 29 6424.5 30 7764.5 31 9216.0 32 10568.5 33 12108.0 34 13658.5 35 15061.5 36 16430.5 37 17782.5 38 19136.5 39 20146.0 40 21256.5 41 22295.5 42 23128.5 43 24359.5 44 25736.0 45 27586.0 46 29987.0 47 32774.5 48 36419.5 49 40861.5 50 46069.0 51 52184.0 52 59650.0 53 67914.5 54 76846.5 55 86925.0 56 97055.0 57 107716.0 58 118863.5 59 130492.5 60 142847.0 61 154820.5 62 167066.5 63 178503.0 64 187472.0 65 194296.5 66 198078.0 67 197742.5 68 193492.5 69 184522.0 70 171213.0 71 155304.5 72 136188.0 73 115037.0 74 93309.5 75 72482.5 76 54372.5 77 38553.0 78 25430.5 79 15830.0 80 9242.5 81 5078.5 82 2767.0 83 1472.5 84 850.0 85 559.0 86 401.0 87 290.0 88 211.5 89 152.5 90 100.5 91 63.5 92 41.0 93 29.0 94 20.0 95 13.5 96 8.0 97 4.0 98 3.5 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0022500000000000003 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.00156 25-29 3.5E-5 30-34 0.032775000000000006 35-39 0.00421 40-44 3.9999999999999996E-5 45-49 0.0 50-54 0.0 55-59 0.0 60-64 0.05496500000000001 65-69 0.034699999999999995 70-74 0.0 75-79 0.0 80-84 0.00624 85-89 0.04915 90-94 0.049284999999999995 95-99 0.01383 100-101 0.0022375 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.2949247941774782 #Duplication Level Relative count 1 100.0 2 0.25518773093486946 3 0.008522969402539845 4 0.0030081068479552394 5 5.013511413258732E-4 6 0.0 7 0.0010027022826517465 8 0.0 9 0.0 10++ 0.002005404565303493 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 358495 3.4672093 3.8153737 70-74 TTTTT 357665 3.4263484 3.6791308 90-94 >>END_MODULE