##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L003_R1_003.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.7479845 34.0 31.0 34.0 31.0 34.0 2 32.99572225 34.0 31.0 34.0 31.0 34.0 3 33.0333025 34.0 31.0 34.0 31.0 34.0 4 36.433559 37.0 37.0 37.0 35.0 37.0 5 36.372584 37.0 37.0 37.0 35.0 37.0 6 36.3357055 37.0 37.0 37.0 35.0 37.0 7 36.32757425 37.0 37.0 37.0 35.0 37.0 8 36.30907925 37.0 37.0 37.0 35.0 37.0 9 38.0860015 39.0 38.0 39.0 37.0 39.0 10-14 38.349169599999996 39.4 38.4 39.4 36.2 39.4 15-19 39.4850306 41.0 39.6 41.0 36.8 41.0 20-24 39.233108599999994 40.4 39.0 41.0 35.8 41.0 25-29 38.7975486 40.0 38.2 41.0 35.0 41.0 30-34 38.04463035 39.8 37.0 41.0 33.4 41.0 35-39 37.0203596 38.6 35.2 40.4 32.6 41.0 40-44 36.091318750000006 36.6 35.0 40.0 31.4 41.0 45-49 35.5594832 35.0 35.0 39.0 32.0 41.0 50-54 34.72439135 35.0 34.6 36.6 31.0 40.2 55-59 34.09587795 35.0 34.0 35.2 30.8 39.2 60-64 33.5934051 35.0 33.8 35.0 30.0 37.0 65-69 33.17459995 35.0 33.0 35.0 29.0 35.8 70-74 32.858929599999996 35.0 33.0 35.0 29.0 35.0 75-79 32.1982817 34.4 32.4 35.0 27.4 35.0 80-84 32.3965687 35.0 33.0 35.0 27.0 35.0 85-89 32.107518850000005 35.0 33.0 35.0 27.0 35.0 90-94 31.681761899999998 35.0 33.0 35.0 25.6 35.0 95-99 31.089952649999997 35.0 32.4 35.0 23.8 35.0 100-101 29.698938624999997 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 31.0 3 10.0 4 35.0 5 95.0 6 311.0 7 856.0 8 1858.0 9 2949.0 10 3737.0 11 4239.0 12 4488.0 13 4736.0 14 5017.0 15 5519.0 16 6218.0 17 6832.0 18 7574.0 19 8365.0 20 9150.0 21 10084.0 22 11915.0 23 14936.0 24 18867.0 25 24187.0 26 30332.0 27 38367.0 28 47331.0 29 58943.0 30 74752.0 31 96086.0 32 126745.0 33 178305.0 34 293896.0 35 709214.0 36 1357645.0 37 644195.0 38 169545.0 39 22569.0 40 66.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.418825717846754 22.589236267809436 19.39311962216552 27.598818392178288 2 30.478650000000002 22.951725 22.801675 23.76795 3 28.670475 21.768575000000002 21.989225 27.571725 4 30.643225 20.695574999999998 20.213625 28.447575000000004 5 30.854625000000002 19.72665 19.503575 29.91515 6 30.058125000000004 19.203899999999997 18.657899999999998 32.080075 7 31.946775 19.031950000000002 19.214275 29.807 8 29.750575 19.26655 19.722875000000002 31.259999999999998 9 30.302075000000002 18.406875 19.752625 31.538424999999997 10-14 30.57092 19.278595000000003 19.4385 30.711985000000002 15-19 30.636395 19.18983 19.31286 30.860915 20-24 30.630594098861643 19.187244717090664 19.356995820472832 30.825165363574865 25-29 30.73517379994857 19.237808358275732 19.295314085723184 30.731703756052514 30-34 30.786436038040204 19.136577071019914 19.196715652927136 30.880271238012746 35-39 30.712903205157954 19.19981268973066 19.27332957005852 30.81395453505286 40-44 30.79713197511541 19.213725694807124 19.211750663897888 30.777391666179575 45-49 30.807345 19.112285 19.179660000000002 30.900709999999997 50-54 30.75514629972978 19.179240088119492 19.233056000299207 30.83255761185152 55-59 30.822027569036464 19.194915014829323 19.199840039208194 30.783217376926014 60-64 30.824654905859905 19.118778352462947 19.18026470243823 30.87630203923892 65-69 30.738952672774385 19.196588671134194 19.256277521740135 30.808181134351287 70-74 30.825675000000004 19.243959999999998 19.171815 30.75855 75-79 30.824465 19.16977 19.16893 30.836835 80-84 30.766310650271638 19.202826527434656 19.22779583339147 30.803066988902234 85-89 30.818622930537217 19.241500459334596 19.21051969506805 30.729356915060137 90-94 30.864109942888263 19.131739850969826 19.157186443420432 30.84696376272148 95-99 30.822721345532646 19.19058552008992 19.210018244557887 30.776674889819557 100-101 31.058844970714205 19.19652527958602 19.08393711813057 30.66069263156921 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.01764411002503 2 54.2466 3 56.2422 4 59.0908 5 60.769775 6 62.1382 7 61.753775 8 61.010575 9 61.8405 10-14 61.282905 15-19 61.497310000000006 20-24 61.45575946243651 25-29 61.46687755600109 30-34 61.66670727605295 35-39 61.526857740210815 40-44 61.57452364129499 45-49 61.708054999999995 50-54 61.5877039115813 55-59 61.605244945962475 60-64 61.70095694509882 65-69 61.547133807125675 70-74 61.584225 75-79 61.6613 80-84 61.56937763917387 85-89 61.547979845597354 90-94 61.71107370560974 95-99 61.5993962353522 100-101 61.71953760228342 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 22.0 1 17.0 2 10.5 3 9.0 4 13.0 5 16.5 6 18.0 7 20.5 8 30.0 9 48.5 10 62.5 11 77.0 12 96.5 13 119.5 14 157.0 15 218.0 16 276.0 17 345.5 18 459.0 19 608.5 20 795.0 21 1012.5 22 1305.0 23 1672.5 24 2170.0 25 2768.5 26 3483.0 27 4316.5 28 5278.0 29 6440.5 30 7654.5 31 8960.5 32 10437.0 33 11967.5 34 13444.5 35 14844.5 36 16281.5 37 17569.5 38 18869.5 39 20174.5 40 21288.0 41 22166.0 42 23171.5 43 24333.0 44 25702.5 45 27379.0 46 29581.5 47 32653.5 48 36298.5 49 40613.5 50 46102.5 51 52712.0 52 60007.5 53 67924.5 54 76977.0 55 86812.0 56 97259.5 57 107960.5 58 119109.0 59 131031.0 60 142941.5 61 155602.5 62 167412.0 63 178344.0 64 187628.5 65 194631.5 66 199010.0 67 198781.0 68 194086.5 69 185302.0 70 172474.0 71 155392.5 72 135566.0 73 114675.0 74 93335.0 75 72502.0 76 53874.0 77 37947.0 78 25054.5 79 15408.5 80 8756.0 81 4718.0 82 2393.5 83 1182.5 84 630.0 85 381.5 86 249.0 87 171.5 88 125.0 89 92.0 90 63.0 91 40.5 92 31.0 93 21.0 94 15.5 95 12.5 96 5.0 97 1.5 98 0.5 99 1.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009125 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 6.5E-4 25-29 0.0012649999999999998 30-34 0.06415499999999999 35-39 0.01616 40-44 0.001565 45-49 0.0 50-54 0.001695 55-59 4.95E-4 60-64 0.042855 65-69 0.048335 70-74 0.0 75-79 0.0 80-84 0.017245 85-89 0.034745 90-94 0.065205 95-99 0.01402 100-101 5.874999999999999E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.27143214196449844 #Duplication Level Relative count 1 100.0 2 0.23959059080633763 3 0.003508648819339672 4 0.002004942182479813 5 0.0 6 0.0 7 5.012355456199532E-4 8 0.0 9 0.0 10++ 0.0015037066368598596 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 366455 3.5247312 4.2166495 70-74 TTTTT 352640 3.3830707 3.7005982 10-14 >>END_MODULE