##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L003_R1_002.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.8010155 34.0 31.0 34.0 31.0 34.0 2 33.03867275 34.0 31.0 34.0 31.0 34.0 3 33.080132 34.0 33.0 34.0 31.0 34.0 4 36.4655935 37.0 37.0 37.0 35.0 37.0 5 36.39493925 37.0 37.0 37.0 35.0 37.0 6 36.36159925 37.0 37.0 37.0 35.0 37.0 7 36.35271 37.0 37.0 37.0 35.0 37.0 8 36.32956625 37.0 37.0 37.0 35.0 37.0 9 38.1196695 39.0 39.0 39.0 37.0 39.0 10-14 38.397099049999994 39.4 38.6 39.4 37.0 39.4 15-19 39.512041749999995 41.0 39.6 41.0 37.0 41.0 20-24 39.261749050000006 40.6 39.0 41.0 36.0 41.0 25-29 38.80962215 40.0 38.2 41.0 35.0 41.0 30-34 38.0618676 40.0 37.0 41.0 33.4 41.0 35-39 37.028499999999994 38.6 35.2 40.4 32.6 41.0 40-44 36.063537999999994 36.6 35.0 40.0 31.2 41.0 45-49 35.52549175 35.2 35.0 39.2 31.8 41.0 50-54 34.67410595 35.0 34.8 37.0 31.0 40.4 55-59 34.00992325 35.0 34.0 35.2 30.4 39.2 60-64 33.47509945 35.0 33.4 35.0 29.6 37.0 65-69 33.05570875 35.0 33.0 35.0 29.0 35.8 70-74 32.70877175 35.0 33.0 35.0 28.2 35.0 75-79 32.010378100000004 34.4 32.4 35.0 26.4 35.0 80-84 32.21162075 35.0 33.0 35.0 27.0 35.0 85-89 31.8543692 35.0 33.0 35.0 26.2 35.0 90-94 31.33118495 35.0 32.8 35.0 24.0 35.0 95-99 30.695921900000002 35.0 31.8 35.0 21.2 35.0 100-101 29.310681125 33.5 29.0 35.0 8.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 22.0 3 10.0 4 35.0 5 95.0 6 329.0 7 924.0 8 2162.0 9 3571.0 10 4575.0 11 5209.0 12 5374.0 13 5674.0 14 6009.0 15 6573.0 16 7194.0 17 8090.0 18 8763.0 19 9650.0 20 10453.0 21 11776.0 22 13591.0 23 16453.0 24 20336.0 25 25514.0 26 32015.0 27 38895.0 28 48452.0 29 60135.0 30 75866.0 31 97255.0 32 128538.0 33 180190.0 34 295370.0 35 690203.0 36 1321299.0 37 654825.0 38 178708.0 39 25790.0 40 77.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.45305396926365 22.580637095501814 19.379057046249045 27.587251888985488 2 30.45655 22.985249999999997 22.761924999999998 23.796275 3 28.622474999999998 21.7531 21.970975 27.653450000000003 4 30.658524999999997 20.661550000000002 20.1886 28.491325 5 30.827725 19.73905 19.530624999999997 29.9026 6 30.028100000000002 19.253 18.6636 32.055299999999995 7 31.90205 19.02055 19.25855 29.81885 8 29.671375 19.321975 19.762 31.24465 9 30.2879 18.4086 19.774525 31.528975 10-14 30.559340000000002 19.300725 19.44454 30.695394999999998 15-19 30.62237 19.200805000000003 19.350459999999998 30.826365 20-24 30.61129662392894 19.206716701793656 19.36861819128736 30.813368482990043 25-29 30.723526120264 19.263406260167283 19.28775148292607 30.72531613664265 30-34 30.75736820005036 19.156382062796332 19.22207184781463 30.864177889338677 35-39 30.705977545261288 19.22713131736434 19.269348346499694 30.797542790874683 40-44 30.78536508973364 19.21865502845784 19.225565231617807 30.770414650190713 45-49 30.792595 19.126170000000002 19.194300000000002 30.886934999999998 50-54 30.731218117523962 19.193723703199513 19.255059258286288 30.819998920990233 55-59 30.807595 19.210279999999997 19.20982 30.772305 60-64 30.826130563991455 19.116958676191256 19.18939691800114 30.867513841816148 65-69 30.74139759912619 19.196191406254883 19.25924514283402 30.803165851784904 70-74 30.836185 19.214525 19.19477 30.754520000000003 75-79 30.855285 19.158485 19.155749999999998 30.830479999999998 80-84 30.784742287878725 19.206676659226087 19.22719917733906 30.78138187555613 85-89 30.890790908615777 19.20141178577046 19.168967920484274 30.738829385129485 90-94 30.91823322723567 19.117144889898118 19.139466320702834 30.82515556216339 95-99 30.879040578769896 19.163796798265484 19.180538704331486 30.776623918633135 100-101 31.203217717295228 19.11655275147104 19.01152718695863 30.6687023442751 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.04030585824914 2 54.252825 3 56.275925 4 59.14985 5 60.73032499999999 6 62.0834 7 61.7209 8 60.916025 9 61.816875 10-14 61.254735000000004 15-19 61.448735 20-24 61.42466510691899 25-29 61.44884225690666 30-34 61.621546089389035 35-39 61.50352033613596 40-44 61.555779739924354 45-49 61.67953000000001 50-54 61.551217038514196 55-59 61.579899999999995 60-64 61.6936444058076 65-69 61.54456345091109 70-74 61.590705 75-79 61.685765 80-84 61.56612416343486 85-89 61.62962029374527 90-94 61.743388789399056 95-99 61.65566449740303 100-101 61.87192006157033 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 16.0 1 15.5 2 10.5 3 5.5 4 8.5 5 12.5 6 20.5 7 25.5 8 32.0 9 38.5 10 54.0 11 76.5 12 85.0 13 110.5 14 155.0 15 216.0 16 295.5 17 391.0 18 486.0 19 617.5 20 799.0 21 1031.0 22 1321.5 23 1728.5 24 2188.0 25 2723.5 26 3501.5 27 4364.0 28 5315.0 29 6474.5 30 7707.5 31 9076.0 32 10600.5 33 12168.0 34 13758.5 35 15047.5 36 16259.5 37 17785.5 38 19071.5 39 20143.0 40 21206.5 41 22210.5 42 23430.5 43 24467.0 44 25751.5 45 27600.5 46 29896.0 47 32713.0 48 36348.5 49 40678.5 50 46044.0 51 53010.0 52 60327.0 53 68157.5 54 77301.0 55 86949.5 56 96886.5 57 107640.0 58 119078.5 59 130773.5 60 142664.0 61 154668.5 62 166979.0 63 178173.0 64 187664.5 65 194547.5 66 197960.5 67 197874.5 68 193569.5 69 184823.5 70 171529.0 71 154478.5 72 134952.0 73 114139.0 74 92941.5 75 72337.5 76 53861.0 77 38258.5 78 25476.5 79 16076.0 80 9573.5 81 5356.5 82 2912.5 83 1644.0 84 977.0 85 668.5 86 491.5 87 360.5 88 262.0 89 181.0 90 131.5 91 98.0 92 66.5 93 38.5 94 24.0 95 18.0 96 12.5 97 7.0 98 3.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.015775 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 9.2E-4 25-29 9.15E-4 30-34 0.060565 35-39 0.01665 40-44 0.00294 45-49 0.0 50-54 9.05E-4 55-59 0.0 60-64 0.032085 65-69 0.037645000000000005 70-74 0.0 75-79 0.0 80-84 0.01227 85-89 0.027325 90-94 0.051210000000000006 95-99 0.011385000000000001 100-101 5.375E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.3174000189940096 #Duplication Level Relative count 1 100.0 2 0.2752873217401769 3 0.005014341015303769 4 0.0020057364061215077 5 0.0010028682030607538 6 5.014341015303769E-4 7 0.0015043023045911306 8 5.014341015303769E-4 9 0.0 10++ 0.0010028682030607538 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 364760 3.5143971 4.0680437 70-74 TTTTT 362895 3.4757447 3.7901404 95-97 >>END_MODULE