##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L002_R2_009.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.430428 34.0 31.0 34.0 31.0 34.0 2 32.6051 34.0 31.0 34.0 31.0 34.0 3 32.63534175 34.0 31.0 34.0 31.0 34.0 4 36.0398575 37.0 37.0 37.0 35.0 37.0 5 36.04450825 37.0 37.0 37.0 35.0 37.0 6 36.0269365 37.0 37.0 37.0 35.0 37.0 7 36.002883 37.0 37.0 37.0 35.0 37.0 8 36.01258225 37.0 37.0 37.0 35.0 37.0 9 37.74311675 39.0 38.0 39.0 35.0 39.0 10-14 37.95469995 39.4 38.2 39.4 35.2 39.4 15-19 39.0890177 41.0 39.0 41.0 36.0 41.0 20-24 38.8841881 40.8 39.0 41.0 35.2 41.0 25-29 38.47003635 40.0 38.0 41.0 34.4 41.0 30-34 37.8168452 40.0 37.0 41.0 33.2 41.0 35-39 36.807234199999996 38.6 35.0 40.6 31.8 41.0 40-44 35.870027449999995 36.6 35.0 40.0 31.0 41.0 45-49 34.948100700000005 35.0 34.8 38.8 30.2 41.0 50-54 33.70695744999999 34.8 33.4 36.2 28.4 39.8 55-59 33.86720820000001 35.0 34.4 35.0 30.0 39.2 60-64 33.5055292 35.0 34.0 35.0 29.8 37.2 65-69 33.19179715 35.0 34.0 35.0 29.0 35.8 70-74 32.879731 35.0 33.4 35.0 29.0 35.0 75-79 32.59813355 35.0 33.0 35.0 27.6 35.0 80-84 32.31496815 35.0 33.0 35.0 27.0 35.0 85-89 31.9893168 35.0 33.0 35.0 26.6 35.0 90-94 31.585931799999997 35.0 33.0 35.0 24.4 35.0 95-99 31.055652200000004 35.0 32.8 35.0 23.0 35.0 100-101 29.95955275 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 8976.0 3 1758.0 4 2099.0 5 2250.0 6 3215.0 7 3950.0 8 4786.0 9 5471.0 10 5895.0 11 5962.0 12 5993.0 13 5807.0 14 5791.0 15 5890.0 16 6310.0 17 7082.0 18 7721.0 19 8890.0 20 10448.0 21 12447.0 22 15078.0 23 18124.0 24 22217.0 25 26981.0 26 32564.0 27 39480.0 28 47790.0 29 58264.0 30 72131.0 31 91133.0 32 118738.0 33 163767.0 34 265888.0 35 636825.0 36 1341962.0 37 701130.0 38 190414.0 39 36566.0 40 207.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.643944102913395 23.042202465477043 19.00592994179117 27.307923489818393 2 30.756090496958944 23.58697919454325 22.087858823223396 23.56907148527441 3 29.370418965364593 21.76797111156353 20.96184907602723 27.899760847044654 4 31.23881060655704 20.526556160437956 19.393548006280817 28.841085226724182 5 30.764332739439205 19.81598952398769 19.41373546068144 30.005942275891666 6 30.213755894974483 19.071794580662456 18.32659627918539 32.387853245177666 7 32.07900377927021 18.948346972569716 19.137548078714666 29.83510116944541 8 29.632721849224392 19.343000790127878 19.79646766065871 31.227809699989017 9 30.435393820539502 18.286565476666933 19.513327463379493 31.76471323941407 10-14 30.60795476597357 19.284173692387654 19.368793435200452 30.73907810643832 15-19 30.679716379849424 19.148986503940865 19.29812970326855 30.87316741294116 20-24 30.643141760961495 19.16368633176802 19.30119870645656 30.891973200813922 25-29 30.747480740249706 19.26173057512613 19.23194132122067 30.758847363403497 30-34 30.81727294865767 19.129868611879914 19.14102697668482 30.9118314627776 35-39 30.743835734545755 19.186349366954907 19.2148804554892 30.85493444301014 40-44 30.79880047819261 19.220435833723858 19.172527566380026 30.8082361217035 45-49 30.864812776005024 19.099041201565093 19.10687196467296 30.929274057756928 50-54 30.75192791290236 19.164692676348814 19.195232038896755 30.88814737185207 55-59 30.80595799837178 19.235702584146274 19.17143397215227 30.786905445329676 60-64 30.840435 19.153755 19.120635 30.885174999999997 65-69 30.745540668547843 19.216626670663352 19.200816603470564 30.837016057318245 70-74 30.79461 19.27469 19.178955000000002 30.751745000000003 75-79 30.838640334381317 19.18147498545227 19.12250404781436 30.857380632352054 80-84 30.743023337095792 19.24094111609206 19.2027048122341 30.81333073457805 85-89 30.794025 19.293355000000002 19.199155 30.713465 90-94 30.861905 19.186505 19.131515 30.820075000000003 95-99 30.75474338692844 19.252164148645363 19.228714027877245 30.76437843654895 100-101 30.879894839421617 19.321218766703215 19.169505432279877 30.629380961595288 >>END_MODULE >>Per base GC content warn #Base %GC 1 57.95186759273179 2 54.32516198223335 3 57.27017981240924 4 60.07989583328123 5 60.770275015330874 6 62.60160914015215 7 61.91410494871562 8 60.86053154921341 9 62.20010705995357 10-14 61.34703287241189 15-19 61.55288379279058 20-24 61.53511496177542 25-29 61.506328103653196 30-34 61.729104411435266 35-39 61.59877017755589 40-44 61.60703659989611 45-49 61.79408683376195 50-54 61.640075284754424 55-59 61.592863443701454 60-64 61.725609999999996 65-69 61.58255672586609 70-74 61.546355 75-79 61.696020966733364 80-84 61.556354071673844 85-89 61.50749 90-94 61.68198 95-99 61.5191218234774 100-101 61.509275801016905 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 130.0 1 89.5 2 45.5 3 36.5 4 30.5 5 36.5 6 45.0 7 59.0 8 72.0 9 72.5 10 75.5 11 102.0 12 144.0 13 178.5 14 216.0 15 274.0 16 352.5 17 442.0 18 550.0 19 690.5 20 895.5 21 1150.0 22 1438.0 23 1812.0 24 2287.0 25 2851.0 26 3627.0 27 4474.5 28 5410.5 29 6580.0 30 7912.0 31 9304.0 32 10663.5 33 12097.5 34 13665.5 35 15102.5 36 16459.0 37 17944.0 38 19151.0 39 20171.5 40 21205.5 41 22201.5 42 23144.0 43 24227.5 44 25647.5 45 27323.0 46 29439.0 47 32184.0 48 35576.0 49 39754.0 50 44950.0 51 51278.5 52 58660.0 53 66873.5 54 75349.5 55 84541.0 56 94937.5 57 106079.5 58 117430.0 59 129248.5 60 141673.5 61 154233.0 62 166564.5 63 177802.0 64 187405.5 65 194886.5 66 199324.5 67 199780.5 68 195794.0 69 186893.5 70 173899.5 71 157240.5 72 137590.0 73 116671.0 74 95077.5 75 73798.0 76 54706.5 77 38625.5 78 25482.5 79 15683.5 80 8984.5 81 4784.5 82 2431.0 83 1215.5 84 667.5 85 442.0 86 336.5 87 263.0 88 221.5 89 176.5 90 133.5 91 115.0 92 98.5 93 82.5 94 68.5 95 58.0 96 48.0 97 39.0 98 32.5 99 25.5 100 16.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.053825 2 0.04305 3 0.04305 4 0.04485 5 0.0383 6 0.036675 7 0.040225 8 0.047825 9 0.055999999999999994 10-14 0.029240000000000002 15-19 0.028965 20-24 0.012635 25-29 0.014280000000000001 30-34 0.030154999999999998 35-39 0.02134 40-44 0.0068200000000000005 45-49 0.009745 50-54 0.014285 55-59 0.0134 60-64 0.0 65-69 4.25E-4 70-74 0.0 75-79 0.00159 80-84 0.0034100000000000003 85-89 0.0 90-94 0.0 95-99 5.149999999999999E-4 100-101 5.5E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.4021702204192639 #Duplication Level Relative count 1 100.0 2 0.29795494560065006 3 0.009028937745474246 4 0.004012861220210775 5 0.0025080382626317347 6 0.0010032153050526938 7 0.0015048229575790409 8 0.0010032153050526938 9 0.0 10++ 0.004514468872737123 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 401290 3.845987 4.3759637 60-64 TTTTT 371770 3.6327744 3.985442 10-14 >>END_MODULE