##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L002_R2_008.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.562424 34.0 31.0 34.0 31.0 34.0 2 32.7531315 34.0 31.0 34.0 31.0 34.0 3 32.7841845 34.0 31.0 34.0 31.0 34.0 4 36.13266825 37.0 37.0 37.0 35.0 37.0 5 36.15263725 37.0 37.0 37.0 35.0 37.0 6 36.15042225 37.0 37.0 37.0 35.0 37.0 7 36.1333075 37.0 37.0 37.0 35.0 37.0 8 36.10579625 37.0 37.0 37.0 35.0 37.0 9 37.8514035 39.0 39.0 39.0 35.0 39.0 10-14 38.108476350000004 39.4 38.6 39.4 35.2 39.4 15-19 39.24555175 41.0 39.6 41.0 36.2 41.0 20-24 39.036915449999995 41.0 39.0 41.0 35.6 41.0 25-29 38.58065620000001 40.2 38.2 41.0 35.0 41.0 30-34 37.961478850000006 40.0 37.2 41.0 33.4 41.0 35-39 36.9536186 38.6 35.2 40.8 32.4 41.0 40-44 35.99272135 37.0 35.0 40.0 31.2 41.0 45-49 35.07298264999999 35.0 35.0 38.8 30.8 41.0 50-54 33.77926795 34.8 33.4 36.2 28.6 39.8 55-59 33.971729800000006 35.0 35.0 35.2 30.4 39.2 60-64 33.5999861 35.0 34.2 35.0 30.0 37.2 65-69 33.2736466 35.0 34.0 35.0 29.6 36.0 70-74 32.960374200000004 35.0 33.8 35.0 29.0 35.0 75-79 32.6374383 35.0 33.0 35.0 28.2 35.0 80-84 32.31064465000001 35.0 33.0 35.0 27.0 35.0 85-89 31.966811199999995 35.0 33.0 35.0 26.4 35.0 90-94 31.546245649999996 35.0 33.0 35.0 24.4 35.0 95-99 30.9592085 35.0 32.6 35.0 22.6 35.0 100-101 29.826942250000002 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 9730.0 3 2010.0 4 2291.0 5 2655.0 6 3190.0 7 3742.0 8 4434.0 9 4859.0 10 5289.0 11 5535.0 12 5583.0 13 5514.0 14 5467.0 15 5741.0 16 6031.0 17 6546.0 18 7476.0 19 8386.0 20 9912.0 21 11714.0 22 13979.0 23 16817.0 24 20513.0 25 25078.0 26 29870.0 27 36326.0 28 44221.0 29 54687.0 30 68130.0 31 86755.0 32 114975.0 33 163557.0 34 271935.0 35 655822.0 36 1340643.0 37 707402.0 38 196002.0 39 36952.0 40 231.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.61488929049927 23.002081511781135 19.027715286824716 27.35531391089488 2 30.758773615498253 23.597707810379408 22.05829660145006 23.58522197267228 3 29.375704604693308 21.716235643327543 20.972363233508183 27.935696518470966 4 31.216087512449224 20.492805405333733 19.41113324028573 28.879973841931317 5 30.74008275895192 19.82022366229625 19.449079130305577 29.990614448446255 6 30.17778032362307 19.017339290944843 18.31185109606561 32.493029289366476 7 32.10330016810709 18.940407425134296 19.131457542764227 29.824834863994383 8 29.65499809806002 19.26625157660814 19.789510300506517 31.28924002482532 9 30.427048267263235 18.240266924875574 19.53872770714545 31.793957100715737 10-14 30.597732893928413 19.276959865965427 19.38132670497436 30.743980535131797 15-19 30.680116023768072 19.142105702617528 19.286547579495437 30.89123069411896 20-24 30.644122578950896 19.1492864651404 19.312449735085362 30.894141220823347 25-29 30.79584522423497 19.244688161005637 19.21958141858996 30.739885196169432 30-34 30.82116938669937 19.123650570182107 19.13343545430702 30.921744588811507 35-39 30.71996129851834 19.183557592287272 19.217604452511033 30.878876656683357 40-44 30.820584671841942 19.199158159280042 19.18008542424984 30.80017174462818 45-49 30.85515322075516 19.087954251936903 19.123225468488823 30.933667058819115 50-54 30.76442674933218 19.15728411546531 19.196649994225904 30.881639140976606 55-59 30.77389034067915 19.217477603165072 19.189806011792008 30.818826044363767 60-64 30.83553 19.132905 19.10258 30.928984999999997 65-69 30.7417767652164 19.199485397041034 19.19425536696836 30.864482470774206 70-74 30.795155 19.243525 19.18342 30.777900000000002 75-79 30.8395724772812 19.13862437407513 19.125753991181238 30.896049157462436 80-84 30.746792348389256 19.22516827998269 19.202216747967928 30.82582262366013 85-89 30.80355 19.263145 19.19564 30.737664999999996 90-94 30.859165 19.160635 19.125505 30.854695 95-99 30.782462562404326 19.20691473310861 19.205524706350594 30.805097998136468 100-101 30.916490850166838 19.259775659896263 19.18268640611574 30.641047083821153 >>END_MODULE >>Per base GC content warn #Base %GC 1 57.97020320139414 2 54.343995588170536 3 57.31140112316427 4 60.09606135438054 5 60.73069720739818 6 62.670809612989544 7 61.92813503210147 8 60.94423812288534 9 62.221005367978975 10-14 61.34171342906022 15-19 61.57134671788703 20-24 61.53826379977424 25-29 61.5357304204044 30-34 61.742913975510874 35-39 61.59883795520169 40-44 61.62075641647012 45-49 61.788820279574274 50-54 61.64606589030879 55-59 61.59271638504292 60-64 61.764514999999996 65-69 61.60625923599061 70-74 61.573055 75-79 61.73562163474363 80-84 61.57261497204939 85-89 61.54121500000001 90-94 61.71386 95-99 61.58756056054079 100-101 61.557537933987994 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 173.0 1 118.5 2 56.5 3 49.5 4 52.0 5 52.5 6 49.5 7 53.0 8 69.5 9 82.0 10 99.0 11 121.5 12 148.0 13 185.0 14 220.0 15 271.0 16 347.0 17 436.5 18 546.5 19 713.5 20 933.0 21 1165.0 22 1451.5 23 1836.0 24 2333.0 25 2941.0 26 3621.5 27 4460.5 28 5445.0 29 6558.5 30 7774.0 31 9069.0 32 10462.5 33 12041.0 34 13628.5 35 15004.5 36 16373.0 37 17775.0 38 19020.5 39 20122.5 40 21268.5 41 22331.5 42 23164.5 43 24127.5 44 25532.0 45 27421.0 46 29476.0 47 32035.5 48 35678.0 49 39800.0 50 44987.0 51 51479.0 52 58640.5 53 66772.0 54 75487.0 55 84924.0 56 95175.5 57 106097.5 58 117938.5 59 129593.0 60 141475.0 61 154223.0 62 166500.5 63 177683.5 64 187252.5 65 194335.0 66 198989.0 67 199327.5 68 194729.0 69 186499.5 70 173715.0 71 157057.0 72 137557.5 73 116051.0 74 94332.0 75 73688.0 76 54922.0 77 38750.0 78 25838.5 79 16107.5 80 9315.0 81 5155.5 82 2788.0 83 1550.5 84 962.5 85 657.0 86 515.5 87 430.0 88 341.0 89 281.0 90 245.5 91 201.5 92 174.5 93 147.5 94 123.0 95 107.5 96 85.5 97 66.5 98 48.5 99 32.5 100 25.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.09665 2 0.0868 3 0.07695 4 0.069075 5 0.05915 6 0.055025 7 0.078575 8 0.10200000000000001 9 0.106725 10-14 0.04967 15-19 0.056685000000000006 20-24 0.023455 25-29 0.026855 30-34 0.049914999999999994 35-39 0.034835 40-44 0.014339999999999999 45-49 0.017625000000000002 50-54 0.027635000000000003 55-59 0.023819999999999997 60-64 0.0 65-69 5.75E-4 70-74 0.0 75-79 0.002975 80-84 0.0066749999999999995 85-89 0.0 90-94 0.0 95-99 0.001925 100-101 0.002275 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.34484999025423313 #Duplication Level Relative count 1 100.0 2 0.29087699413732404 3 0.006519656765146918 4 0.0010030241177149104 5 5.015120588574552E-4 6 0.0 7 0.0 8 0.0 9 5.015120588574552E-4 10++ 0.0030090723531447316 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 401490 3.87344 4.370557 60-64 TTTTT 377820 3.6941142 4.1184144 10-14 >>END_MODULE