##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L002_R2_007.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.62906775 34.0 31.0 34.0 31.0 34.0 2 32.80490625 34.0 31.0 34.0 31.0 34.0 3 32.848328 34.0 33.0 34.0 31.0 34.0 4 36.18939725 37.0 37.0 37.0 35.0 37.0 5 36.2018125 37.0 37.0 37.0 35.0 37.0 6 36.1988285 37.0 37.0 37.0 35.0 37.0 7 36.18333375 37.0 37.0 37.0 35.0 37.0 8 36.14283225 37.0 37.0 37.0 35.0 37.0 9 37.9043145 39.0 39.0 39.0 37.0 39.0 10-14 38.16712595 39.4 39.2 39.4 36.6 39.4 15-19 39.13103115 41.0 39.8 41.0 36.4 41.0 20-24 38.57146335 40.6 38.6 41.0 34.2 41.0 25-29 38.65761245 40.0 38.4 41.0 35.0 41.0 30-34 38.07263395 40.0 37.4 41.0 34.0 41.0 35-39 36.9257126 38.8 35.2 40.8 32.2 41.0 40-44 36.047920850000004 37.0 35.0 40.0 31.8 41.0 45-49 35.116931650000005 35.0 35.0 39.0 30.8 41.0 50-54 33.873476700000005 34.8 33.6 36.2 29.2 39.8 55-59 34.072526599999996 35.0 35.0 35.2 31.0 39.2 60-64 33.6911463 35.0 34.6 35.0 30.6 37.2 65-69 33.35679935 35.0 34.0 35.0 30.0 36.0 70-74 33.04590425 35.0 34.0 35.0 29.0 35.0 75-79 32.57715265 35.0 33.0 35.0 28.2 35.0 80-84 32.3360832 35.0 33.0 35.0 27.0 35.0 85-89 32.0000114 35.0 33.0 35.0 27.0 35.0 90-94 31.24014105 35.0 32.2 35.0 22.4 35.0 95-99 30.806458550000002 35.0 32.2 35.0 21.8 35.0 100-101 29.156022 34.0 30.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 12593.0 3 2053.0 4 2304.0 5 2545.0 6 3137.0 7 3713.0 8 4255.0 9 4645.0 10 4915.0 11 5296.0 12 5157.0 13 5140.0 14 5259.0 15 5181.0 16 5709.0 17 6350.0 18 7117.0 19 8205.0 20 9560.0 21 11243.0 22 13534.0 23 16275.0 24 19669.0 25 23880.0 26 28176.0 27 34449.0 28 42359.0 29 52060.0 30 65567.0 31 84989.0 32 114523.0 33 167868.0 34 298926.0 35 725917.0 36 1316544.0 37 663218.0 38 184359.0 39 33131.0 40 179.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.598395866427218 22.985535650737944 19.038060794994514 27.378007687840324 2 30.75007299255451 23.593071641879245 22.059927513260106 23.596927852306138 3 29.332896409825572 21.73235497848719 21.02151981789402 27.913228793793216 4 31.238170469386766 20.46758464575108 19.40976618014476 28.8844787047174 5 30.7550559761865 19.779553957399887 19.420044012125985 30.04534605428763 6 30.198893741922326 19.072579888423324 18.307657853218746 32.420868516435604 7 32.098349072960616 18.913841783508957 19.112887416034667 29.874921727495764 8 29.58353632801101 19.31290319752624 19.79535631671428 31.30820415774847 9 30.42824635029412 18.260239026461228 19.548747697213113 31.762766926031542 10-14 30.587191696932592 19.27706706844177 19.373795585572132 30.76194564905351 15-19 30.91564315687318 19.15437067469426 19.191143391720995 30.738842776711568 20-24 30.763907073809204 19.275622509638744 19.182719733402205 30.77775068314985 25-29 30.735931515638367 19.22154193078158 19.255152917481674 30.78737363609838 30-34 30.820468532172306 19.110332058576205 19.134638804606542 30.934560604644943 35-39 30.82547474602838 19.19620144140017 19.176529019249205 30.801794793322244 40-44 30.798145078647153 19.184300066057084 19.17237337041015 30.845181484885615 45-49 30.865732498908923 19.11889287486605 19.077495418371388 30.93787920785364 50-54 30.74271706895123 19.151649959792223 19.193904148986118 30.911728822270423 55-59 30.801806691024296 19.209499635996302 19.18828776583376 30.800405907145638 60-64 30.85622968498375 19.114615291692232 19.099515279612223 30.929639743711796 65-69 30.734453073445305 19.208791920879193 19.20137692013769 30.85537808553781 70-74 30.812614999999997 19.247835 19.144935 30.794614999999997 75-79 30.916565774111753 19.175822670192055 19.089294761541208 30.81831679415499 80-84 30.745897023773207 19.20078353868635 19.21991192441062 30.833407513129824 85-89 30.833651541682578 19.245205962260297 19.173950958697546 30.747191537359576 90-94 30.94624342691022 19.213309735235402 19.077854173094817 30.76259266475956 95-99 30.77698311703742 19.205660070911403 19.202984791612245 30.814372020438935 100-101 31.064170414907892 19.428224259544965 19.123238520429055 30.38436680511809 >>END_MODULE >>Per base GC content warn #Base %GC 1 57.97640355426754 2 54.34700084486065 3 57.24612520361879 4 60.12264917410416 5 60.80040203047413 6 62.61976225835792 7 61.97327080045638 8 60.891740485759485 9 62.191013276325656 10-14 61.34913734598611 15-19 61.654485933584745 20-24 61.541657756959054 25-29 61.52330515173674 30-34 61.75502913681725 35-39 61.62726953935063 40-44 61.64332656353276 45-49 61.80361170676256 50-54 61.654445891221656 55-59 61.602212598169935 60-64 61.78586942869554 65-69 61.58983115898311 70-74 61.60723 75-79 61.734882568266734 80-84 61.57930453690304 85-89 61.58084307904216 90-94 61.70883609166978 95-99 61.591355137476356 100-101 61.448537220025976 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 107.0 1 81.5 2 52.0 3 48.0 4 51.0 5 51.0 6 52.0 7 60.5 8 81.0 9 106.0 10 111.0 11 132.0 12 173.5 13 220.5 14 281.0 15 334.5 16 419.5 17 517.0 18 669.5 19 858.5 20 1008.0 21 1211.5 22 1539.0 23 1947.0 24 2420.0 25 2952.5 26 3662.0 27 4556.0 28 5356.0 29 6448.5 30 7794.0 31 9131.0 32 10674.0 33 12151.5 34 13599.0 35 14997.5 36 16316.0 37 17734.0 38 19155.0 39 20304.0 40 21276.5 41 22144.5 42 23245.0 43 24443.5 44 25694.0 45 27271.5 46 29418.5 47 32207.0 48 35633.5 49 39834.0 50 44960.5 51 51135.0 52 58292.5 53 66568.5 54 75357.5 55 84667.5 56 95122.5 57 105928.0 58 117172.0 59 129341.5 60 141664.5 61 154130.0 62 166290.5 63 177534.0 64 187200.5 65 194300.5 66 198866.5 67 199229.5 68 195202.5 69 186840.5 70 173569.5 71 156925.5 72 137255.5 73 116089.0 74 94608.0 75 73496.5 76 54572.5 77 38702.5 78 25873.0 79 16166.5 80 9499.5 81 5342.0 82 2920.5 83 1675.5 84 1076.5 85 743.5 86 575.5 87 453.0 88 389.5 89 332.0 90 263.0 91 232.5 92 192.5 93 165.5 94 156.0 95 129.5 96 101.0 97 82.0 98 59.5 99 37.0 100 24.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.173525 2 0.16105 3 0.135075 4 0.11754999999999999 5 0.107075 6 0.091125 7 0.148525 8 0.192375 9 0.18887500000000002 10-14 0.09668 15-19 0.11616499999999999 20-24 0.06219 25-29 0.06244 30-34 0.089465 35-39 0.06314499999999999 40-44 0.056139999999999995 45-49 0.03009 50-54 0.06908 55-59 0.05596 60-64 7.999999999999999E-5 65-69 9.999999999999999E-6 70-74 0.0 75-79 0.00914 80-84 0.0177 85-89 4.9999999999999996E-6 90-94 4.15E-4 95-99 0.01044 100-101 0.028112500000000002 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.321826213844528 #Duplication Level Relative count 1 100.0 2 0.25819195443789356 3 0.004512092407652509 4 0.002005374403401115 5 0.0010026872017005575 6 5.013436008502787E-4 7 0.0 8 0.0 9 0.0 10++ 0.0025067180042513937 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 406310 3.9052262 4.549765 1 TTTTT 387780 3.806967 4.168043 85-89 >>END_MODULE