##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L002_R2_006.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.36824575 34.0 31.0 34.0 31.0 34.0 2 32.5610525 34.0 31.0 34.0 31.0 34.0 3 32.595813 34.0 31.0 34.0 31.0 34.0 4 35.98931525 37.0 37.0 37.0 35.0 37.0 5 35.97970525 37.0 37.0 37.0 35.0 37.0 6 35.99343775 37.0 37.0 37.0 35.0 37.0 7 35.97907275 37.0 37.0 37.0 35.0 37.0 8 35.99022125 37.0 37.0 37.0 35.0 37.0 9 37.70746675 39.0 38.0 39.0 35.0 39.0 10-14 37.93570015 39.4 38.2 39.4 35.2 39.4 15-19 38.99755495 41.0 39.0 41.0 36.0 41.0 20-24 38.8325051 40.6 39.0 41.0 35.0 41.0 25-29 38.4615911 40.0 38.0 41.0 34.4 41.0 30-34 37.76287685 40.0 36.8 41.0 33.0 41.0 35-39 36.78635355 38.6 35.0 40.6 31.8 41.0 40-44 35.8394805 36.6 35.0 40.0 31.0 41.0 45-49 34.9563021 35.0 34.8 38.8 30.4 41.0 50-54 33.71218985 34.8 33.2 36.2 28.2 39.8 55-59 33.86053165 35.0 34.0 35.0 30.0 39.0 60-64 33.5090508 35.0 34.0 35.0 29.6 37.0 65-69 33.1945625 35.0 34.0 35.0 29.0 35.8 70-74 32.91033 35.0 33.4 35.0 29.0 35.0 75-79 32.59968765 35.0 33.0 35.0 27.4 35.0 80-84 32.28971325 35.0 33.0 35.0 27.0 35.0 85-89 32.00638965 35.0 33.0 35.0 26.8 35.0 90-94 31.597771599999998 35.0 33.0 35.0 24.4 35.0 95-99 31.035797649999996 35.0 32.6 35.0 23.0 35.0 100-101 29.978349625 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 9693.0 3 1778.0 4 1966.0 5 2368.0 6 2960.0 7 3822.0 8 4501.0 9 5287.0 10 5497.0 11 5564.0 12 5641.0 13 5704.0 14 5511.0 15 5576.0 16 5999.0 17 6689.0 18 7558.0 19 8795.0 20 10273.0 21 12072.0 22 14788.0 23 18095.0 24 22087.0 25 27012.0 26 32515.0 27 40284.0 28 48351.0 29 60018.0 30 74819.0 31 94896.0 32 123672.0 33 171148.0 34 274639.0 35 638986.0 36 1325139.0 37 693672.0 38 186822.0 39 35602.0 40 201.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.614785727199383 23.00342001134829 19.00953386382155 27.372260397630782 2 30.717592111675668 23.612583412201392 22.072234547137985 23.597589928984956 3 29.31018778026906 21.7786324871877 21.016275624599615 27.894904107943624 4 31.16665911605819 20.54067529471777 19.443475936377656 28.849189652846384 5 30.767382225217204 19.83316928788924 19.399458499840293 29.99998998705326 6 30.216514394500955 19.082791974429778 18.287660017025146 32.413033614044124 7 32.03461287774862 18.942302619917132 19.1537890930583 29.869295409275953 8 29.691509896286515 19.347590186724272 19.74984247952234 31.21105743746687 9 30.413618611462173 18.299809102180095 19.5478217293432 31.738750557014534 10-14 30.604703564962765 19.286734435142336 19.384963506737353 30.72359849315754 15-19 30.680047894098184 19.13635922953642 19.3098045850994 30.873788291265996 20-24 30.64294023938128 19.17700205355236 19.323312221809054 30.85674548525731 25-29 30.71629 19.27022 19.252675 30.760815 30-34 30.81417559192306 19.15409290400365 19.135547024928982 30.896184479144313 35-39 30.72943 19.204285 19.216815 30.84947 40-44 30.812885 19.209715 19.179655 30.797745 45-49 30.852065 19.12415 19.10087 30.922915 50-54 30.738255355709 19.17108593399722 19.20850643356089 30.882152276732892 55-59 30.78264423479327 19.242880772864233 19.194160758248227 30.78031423409427 60-64 30.82603 19.14636 19.133725 30.893884999999997 65-69 30.70523794573779 19.21667939419276 19.239044440041102 30.839038220028353 70-74 30.758760000000002 19.278064999999998 19.20249 30.760685 75-79 30.8209 19.175155 19.129794999999998 30.87415 80-84 30.725350000000002 19.234765 19.2323 30.807585 85-89 30.77092 19.280045 19.21978 30.729255 90-94 30.838905 19.203475 19.143165 30.814455000000002 95-99 30.72424 19.24486 19.24651 30.784390000000002 100-101 30.877412500000002 19.3578375 19.1619375 30.6028125 >>END_MODULE >>Per base GC content warn #Base %GC 1 57.987046124830165 2 54.31518204066062 3 57.20509188821269 4 60.015848768904576 5 60.767372212270466 6 62.62954800854508 7 61.903908287024564 8 60.90256733375339 9 62.15236916847671 10-14 61.32830205812031 15-19 61.553836185364176 20-24 61.49968572463859 25-29 61.477105 30-34 61.71036007106737 35-39 61.578900000000004 40-44 61.61063 45-49 61.77498 50-54 61.620407632441896 55-59 61.562958468887544 60-64 61.719915 65-69 61.54427616576614 70-74 61.519445 75-79 61.695049999999995 80-84 61.532935 85-89 61.500175 90-94 61.65336 95-99 61.50863 100-101 61.480225 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 177.0 1 114.0 2 52.5 3 54.0 4 62.5 5 62.5 6 65.0 7 84.5 8 94.5 9 99.0 10 107.5 11 133.5 12 160.5 13 201.0 14 251.0 15 286.5 16 332.5 17 413.5 18 553.5 19 724.5 20 890.0 21 1127.5 22 1467.0 23 1880.0 24 2346.0 25 2921.5 26 3623.5 27 4373.0 28 5345.0 29 6582.5 30 7858.5 31 9167.0 32 10596.0 33 12057.0 34 13558.5 35 15124.5 36 16452.5 37 17747.0 38 19117.5 39 20208.0 40 21277.5 41 22224.0 42 23127.5 43 24301.0 44 25643.5 45 27340.5 46 29293.0 47 32064.0 48 35524.5 49 39942.0 50 45405.5 51 51277.0 52 58401.0 53 66495.5 54 75319.0 55 85093.5 56 95350.5 57 106110.5 58 117388.0 59 129405.0 60 141881.0 61 154458.0 62 166641.5 63 177992.0 64 187460.5 65 195287.0 66 200014.0 67 200490.5 68 196151.0 69 186944.0 70 173986.5 71 156965.5 72 137452.0 73 116080.0 74 94169.5 75 73611.0 76 54790.0 77 38202.0 78 24895.0 79 15268.0 80 8801.5 81 4699.0 82 2404.0 83 1218.0 84 688.5 85 446.0 86 329.0 87 243.5 88 201.0 89 194.5 90 157.0 91 111.5 92 87.5 93 69.5 94 60.5 95 57.0 96 48.0 97 33.5 98 17.5 99 12.0 100 12.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.16115000000000002 2 0.123275 3 0.096 4 0.118425 5 0.1293 6 8.749999999999999E-4 7 0.005425 8 0.013 9 0.025050000000000003 10-14 0.004144999999999999 15-19 2.05E-4 20-24 1.15E-4 25-29 0.0 30-34 0.00474 35-39 0.0 40-44 0.0 45-49 0.0 50-54 0.0013349999999999998 55-59 2.9999999999999997E-5 60-64 0.0 65-69 2.05E-4 70-74 0.0 75-79 0.0 80-84 0.0 85-89 0.0 90-94 0.0 95-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.3557918617608724 #Duplication Level Relative count 1 100.0 2 0.28936084852435995 3 0.005516411323687972 4 0.0010029838770341767 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0025074596925854418 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 404880 3.8689888 4.3866973 60-64 TTTTT 382770 3.7205532 4.097841 95-97 >>END_MODULE