##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L002_R2_005.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.4845775 34.0 31.0 34.0 31.0 34.0 2 32.685024 34.0 31.0 34.0 31.0 34.0 3 32.6888815 34.0 31.0 34.0 31.0 34.0 4 36.087699 37.0 37.0 37.0 35.0 37.0 5 36.08092475 37.0 37.0 37.0 35.0 37.0 6 36.0825875 37.0 37.0 37.0 35.0 37.0 7 36.08226825 37.0 37.0 37.0 35.0 37.0 8 36.07464875 37.0 37.0 37.0 35.0 37.0 9 37.81221825 39.0 38.0 39.0 35.0 39.0 10-14 38.086278799999995 39.4 38.4 39.4 35.2 39.4 15-19 39.156650850000005 41.0 39.2 41.0 36.0 41.0 20-24 38.921115099999994 41.0 39.0 41.0 35.4 41.0 25-29 38.586863449999996 40.2 38.2 41.0 34.8 41.0 30-34 37.912538899999994 40.0 37.2 41.0 33.4 41.0 35-39 36.92262865 38.6 35.2 40.8 32.4 41.0 40-44 35.945530250000004 37.0 35.0 40.0 31.0 41.0 45-49 35.06168055 35.0 34.8 38.8 30.6 41.0 50-54 33.81205845 34.8 33.4 36.2 28.6 39.8 55-59 33.98740935 35.0 35.0 35.2 30.6 39.2 60-64 33.58460155 35.0 34.2 35.0 30.0 37.2 65-69 33.2331805 35.0 34.0 35.0 29.2 36.0 70-74 32.94499215 35.0 33.8 35.0 29.0 35.0 75-79 32.619537949999994 35.0 33.0 35.0 28.0 35.0 80-84 32.30265395 35.0 33.0 35.0 27.0 35.0 85-89 31.989835199999995 35.0 33.0 35.0 26.6 35.0 90-94 31.576597549999995 35.0 33.0 35.0 24.4 35.0 95-99 31.005723 35.0 32.8 35.0 23.0 35.0 100-101 29.772272875 34.0 30.5 35.0 10.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 8795.0 3 1831.0 4 2236.0 5 2511.0 6 3241.0 7 3963.0 8 4559.0 9 5091.0 10 5536.0 11 5439.0 12 5571.0 13 5535.0 14 5642.0 15 5891.0 16 6251.0 17 6918.0 18 7611.0 19 8753.0 20 10114.0 21 11858.0 22 14246.0 23 17315.0 24 20990.0 25 25510.0 26 30669.0 27 37405.0 28 45211.0 29 55676.0 30 69568.0 31 88499.0 32 116373.0 33 164877.0 34 269974.0 35 648859.0 36 1341843.0 37 704778.0 38 193012.0 39 37619.0 40 230.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.59079560869365 23.00925007563963 19.03751825870557 27.362436056961148 2 30.737843240547303 23.60758359055301 22.082392753916384 23.572180414983304 3 29.31100000801064 21.718517190829424 21.07658971113639 27.893893090023553 4 31.224314183215125 20.460500142832856 19.431001965610452 28.884183708341567 5 30.719840076156117 19.831663328660376 19.445499525401356 30.00299706978215 6 30.17267775857635 19.057369462258855 18.336698864358425 32.43325391480637 7 32.06893877418274 18.914431960612134 19.137089490814752 29.87953977439038 8 29.63307402770397 19.326575974747975 19.787316341859093 31.25303365568896 9 30.452740906082383 18.279171666189132 19.535735689896562 31.73235173783192 10-14 30.580443694815756 19.280886669347723 19.387043495137085 30.751626140699432 15-19 30.727997723070725 19.15560772101475 19.275990704039152 30.84040385187537 20-24 30.659378938590542 19.158834574246676 19.309487381408484 30.8722991057543 25-29 30.73811346251577 19.240961969090645 19.24260713171497 30.778317436678616 30-34 30.810521283080327 19.104143128710817 19.143150968141164 30.942184620067696 35-39 30.73459133699773 19.200648595788415 19.209944682036095 30.85481538517776 40-44 30.80868615407001 19.214087012045102 19.164230553743696 30.812996280141192 45-49 30.86399313888919 19.089624760001627 19.105910497745548 30.940471603363633 50-54 30.732195054069038 19.16637627399627 19.208683848412175 30.892744823522513 55-59 30.783932810345107 19.243226328708936 19.18855802947708 30.78428283146888 60-64 30.83676 19.1384 19.109524999999998 30.915315 65-69 30.729231536461576 19.213035960651798 19.215715960785797 30.842016542100826 70-74 30.802030000000002 19.279665 19.16319 30.755115 75-79 30.83690900858162 19.155605973454335 19.148180955634295 30.859304062329752 80-84 30.740220457369915 19.22561167532551 19.22503166909044 30.809136198214134 85-89 30.818089999999998 19.277715 19.178925 30.72527 90-94 30.860349999999997 19.179445 19.122355 30.83785 95-99 30.773252317142948 19.21538515615512 19.207480137578322 30.803882389123615 100-101 30.91972333598837 19.362718259414763 19.14567761232538 30.57188079227149 >>END_MODULE >>Per base GC content warn #Base %GC 1 57.953231665654805 2 54.31002365553061 3 57.20489309803419 4 60.10849789155669 5 60.72283714593827 6 62.60593167338272 7 61.948478548573114 8 60.88610768339293 9 62.18509264391431 10-14 61.33206983551519 15-19 61.568401574946094 20-24 61.53167804434484 25-29 61.51643089919438 30-34 61.75270590314802 35-39 61.58940672217549 40-44 61.6216824342112 45-49 61.80446474225283 50-54 61.62493987759156 55-59 61.568215641813985 60-64 61.752075 65-69 61.571248078562405 70-74 61.557145000000006 75-79 61.69621307091136 80-84 61.54935665558404 85-89 61.54336 90-94 61.6982 95-99 61.577134706266555 100-101 61.49160412825986 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 87.0 1 64.5 2 41.5 3 36.5 4 32.0 5 40.0 6 55.5 7 61.5 8 63.5 9 68.0 10 79.5 11 103.0 12 126.0 13 162.0 14 223.0 15 290.5 16 352.5 17 441.0 18 542.5 19 702.5 20 912.0 21 1123.0 22 1417.5 23 1815.0 24 2294.0 25 2897.5 26 3620.0 27 4446.5 28 5426.5 29 6588.0 30 7852.5 31 9243.0 32 10585.0 33 11986.0 34 13606.5 35 15048.0 36 16411.0 37 17916.5 38 19084.0 39 20144.0 40 21356.0 41 22380.5 42 23222.0 43 24214.0 44 25744.5 45 27508.5 46 29600.5 47 32206.5 48 35515.5 49 39708.0 50 44814.5 51 51265.5 52 58716.0 53 66772.0 54 75466.5 55 84742.0 56 95143.5 57 106188.5 58 117719.5 59 129874.5 60 142078.0 61 154242.0 62 166569.5 63 178258.5 64 187829.0 65 194820.0 66 198862.0 67 199047.0 68 195014.5 69 186602.5 70 173547.5 71 156713.0 72 137230.5 73 116233.5 74 94499.0 75 73466.0 76 54732.5 77 38472.5 78 25413.5 79 15929.0 80 9159.0 81 4936.5 82 2679.0 83 1483.5 84 914.0 85 620.5 86 455.0 87 374.0 88 339.0 89 267.0 90 208.5 91 177.0 92 147.0 93 124.5 94 107.0 95 86.0 96 78.0 97 65.5 98 48.5 99 35.0 100 22.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.1846 2 0.1502 3 0.1328 4 0.145525 5 0.152475 6 0.06530000000000001 7 0.07075000000000001 8 0.0793 9 0.094625 10-14 0.0394 15-19 0.023245000000000002 20-24 0.01182 25-29 0.009885 30-34 0.032915 35-39 0.011685 40-44 0.002925 45-49 0.00453 50-54 0.006085 55-59 0.006035 60-64 0.0 65-69 4.9999999999999996E-6 70-74 0.0 75-79 2.3999999999999998E-4 80-84 0.001075 85-89 0.0 90-94 0.0 95-99 2.35E-4 100-101 0.00145 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.3353373613797361 #Duplication Level Relative count 1 100.0 2 0.272782886885361 3 0.007521586954559586 4 0.0020057565212158895 5 0.0015043173909119172 6 0.0 7 5.014391303039724E-4 8 0.0 9 0.0015043173909119172 10++ 0.0020057565212158895 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 394420 3.78382 4.2515125 60-64 TTTTT 377145 3.6912034 4.022679 95-97 >>END_MODULE