##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L002_R2_003.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.63614325 34.0 31.0 34.0 31.0 34.0 2 32.83097275 34.0 31.0 34.0 31.0 34.0 3 32.842723 34.0 31.0 34.0 31.0 34.0 4 36.2239985 37.0 37.0 37.0 35.0 37.0 5 36.22183725 37.0 37.0 37.0 35.0 37.0 6 36.19566475 37.0 37.0 37.0 35.0 37.0 7 36.1889625 37.0 37.0 37.0 35.0 37.0 8 36.15983175 37.0 37.0 37.0 35.0 37.0 9 37.9305485 39.0 39.0 39.0 37.0 39.0 10-14 38.2412877 39.4 39.2 39.4 37.0 39.4 15-19 39.41025375 41.0 40.0 41.0 37.0 41.0 20-24 39.210093900000004 41.0 39.4 41.0 36.2 41.0 25-29 38.83726575 40.4 38.6 41.0 35.0 41.0 30-34 38.161638 40.0 37.4 41.0 34.2 41.0 35-39 37.1856839 39.0 35.2 40.8 33.0 41.0 40-44 36.24152865000001 37.0 35.0 40.0 32.2 41.0 45-49 35.36719384999999 35.0 35.0 39.0 31.4 41.0 50-54 34.12419065 35.0 33.8 36.2 29.8 39.8 55-59 34.269672650000004 35.0 35.0 35.2 31.0 39.2 60-64 33.90280944999999 35.0 35.0 35.0 31.0 37.2 65-69 33.56761125 35.0 34.4 35.0 30.6 36.0 70-74 33.269683 35.0 34.0 35.0 30.0 35.0 75-79 33.00442595 35.0 34.0 35.0 29.0 35.0 80-84 32.70750415 35.0 33.0 35.0 29.0 35.0 85-89 32.3995838 35.0 33.0 35.0 27.4 35.0 90-94 32.0588596 35.0 33.0 35.0 27.0 35.0 95-99 31.5372724 35.0 33.0 35.0 25.0 35.0 100-101 30.414220625 34.0 31.5 35.0 21.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 8439.0 3 1513.0 4 1596.0 5 1838.0 6 2360.0 7 2801.0 8 3302.0 9 3933.0 10 3945.0 11 4178.0 12 4320.0 13 4265.0 14 4322.0 15 4514.0 16 4831.0 17 5457.0 18 6057.0 19 6992.0 20 8029.0 21 9785.0 22 11696.0 23 14344.0 24 17240.0 25 21560.0 26 26015.0 27 31685.0 28 38860.0 29 48554.0 30 60971.0 31 78114.0 32 103770.0 33 149279.0 34 249059.0 35 633963.0 36 1422582.0 37 757712.0 38 203037.0 39 38861.0 40 221.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.622408301448345 23.010251607604317 18.997275586450048 27.37006450449729 2 30.751682833732097 23.569031404971913 22.0498202366465 23.629465524649486 3 29.358990820200116 21.683494756348733 20.998432448491428 27.95908197495972 4 31.22996472089474 20.468286336227386 19.38792003402807 28.913828908849805 5 30.802313732917007 19.745110111461166 19.41720369150528 30.03537246411655 6 30.161582723655695 19.02114133256432 18.301093389447207 32.51618255433278 7 32.07231068385121 18.91463865940946 19.143316852879273 29.86973380386006 8 29.695703710532012 19.239717682139908 19.778732775965306 31.285845831362774 9 30.513268528155933 18.209553440473552 19.49040134369916 31.78677668767136 10-14 30.621952616780828 19.235257821841135 19.37147765684865 30.771311904529387 15-19 30.68687284212149 19.122866017983174 19.274247185343217 30.916013954552117 20-24 30.669591620211197 19.12371051764184 19.28571417851938 30.920983683627583 25-29 30.751054181836867 19.219443886715986 19.22400689213951 30.80549503930764 30-34 30.81968086099375 19.087130533165748 19.138745995022035 30.954442610818468 35-39 30.722147762480596 19.154610942430196 19.20370934585658 30.91953194923263 40-44 30.830352727070277 19.184871487569595 19.152727310380243 30.83204847497989 45-49 30.872900580524014 19.074345423840946 19.09624123279906 30.95651276283598 50-54 30.777790222022045 19.14066218397087 19.17450674897942 30.907040845027655 55-59 30.799876642299434 19.182367552422647 19.17565941469122 30.842096390586697 60-64 30.850173562716954 19.115688894611118 19.095373869217337 30.938763673454595 65-69 30.74065575922952 19.191336716967854 19.202026720709352 30.86598080309328 70-74 30.812728081272805 19.25289192528919 19.14613191461319 30.788248078824807 75-79 30.83108230447551 19.13998321785294 19.115441540429288 30.91349293724226 80-84 30.742549601815355 19.207686068687977 19.202390607982895 30.847373721513772 85-89 30.832542122507682 19.248910634068498 19.16640037416118 30.752146869262635 90-94 30.87266785263517 19.151274684475762 19.11091462191766 30.865142840971405 95-99 30.770971022089512 19.201414965594502 19.208250958864323 30.819363053451664 100-101 30.916458125672676 19.328221500477508 19.12349148193854 30.63182889191128 >>END_MODULE >>Per base GC content warn #Base %GC 1 57.992472805945624 2 54.38114835838158 3 57.318072795159836 4 60.143793629744536 5 60.837686197033555 6 62.67776527798847 7 61.942044487711264 8 60.981549541894786 9 62.300045215827296 10-14 61.39326452131022 15-19 61.60288679667361 20-24 61.590575303838776 25-29 61.55654922114451 30-34 61.77412347181222 35-39 61.64167971171322 40-44 61.66240120205016 45-49 61.829413343359995 50-54 61.68483106704971 55-59 61.641973032886135 60-64 61.78893723617155 65-69 61.60663656232279 70-74 61.60097616009762 75-79 61.74457524171777 80-84 61.58992332332913 85-89 61.58468899177032 90-94 61.737810693606576 95-99 61.59033407554118 100-101 61.54828701758396 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 47.0 1 35.5 2 23.5 3 24.0 4 21.5 5 22.5 6 29.5 7 45.5 8 63.0 9 68.0 10 79.0 11 105.0 12 126.0 13 167.5 14 231.0 15 291.5 16 365.5 17 453.5 18 566.5 19 720.0 20 931.0 21 1153.0 22 1437.0 23 1824.5 24 2315.5 25 2878.0 26 3564.5 27 4454.0 28 5363.5 29 6344.0 30 7634.5 31 9094.5 32 10488.5 33 11911.0 34 13383.0 35 14760.5 36 16180.5 37 17527.5 38 18753.5 39 19940.0 40 21043.0 41 22053.5 42 23067.5 43 24134.5 44 25483.5 45 27150.0 46 29216.0 47 32035.0 48 35454.5 49 39767.5 50 44899.0 51 51024.0 52 58220.5 53 66281.0 54 74966.0 55 84369.0 56 94951.5 57 106398.0 58 118065.0 59 129748.0 60 142165.0 61 154501.5 62 166911.5 63 178796.5 64 188762.5 65 195921.5 66 199654.0 67 199996.0 68 195692.0 69 186873.0 70 173993.5 71 157453.0 72 138063.0 73 116856.5 74 95035.5 75 73892.0 76 54765.5 77 38366.5 78 25216.0 79 15477.0 80 8735.5 81 4575.5 82 2344.5 83 1236.0 84 713.5 85 477.0 86 359.0 87 266.5 88 219.5 89 190.5 90 152.0 91 127.5 92 108.0 93 89.0 94 75.5 95 59.5 96 46.0 97 42.0 98 29.5 99 17.0 100 11.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.16199999999999998 2 0.097825 3 0.11492500000000001 4 0.0825 5 0.070575 6 0.13165 7 0.15445 8 0.1976 9 0.20087500000000003 10-14 0.109995 15-19 0.08995 20-24 0.048555 25-29 0.06586499999999999 30-34 0.097765 35-39 0.05785 40-44 0.044105 45-49 0.026529999999999998 50-54 0.043035000000000004 55-59 0.046775000000000004 60-64 1.25E-4 65-69 3.5E-5 70-74 9.999999999999999E-6 75-79 0.006834999999999999 80-84 0.0087 85-89 3.15E-4 90-94 1.55E-4 95-99 0.014530000000000001 100-101 0.0146625 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.36171966725786914 #Duplication Level Relative count 1 100.0 2 0.26776178227055975 3 0.005014265585591007 4 0.0020057062342364027 5 5.014265585591007E-4 6 0.0010028531171182014 7 0.0025071327927955033 8 0.0010028531171182014 9 0.001504279675677302 10++ 0.0040114124684728055 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 375465 3.6285846 4.2533636 60-64 TTTTT 364265 3.5702903 3.9155056 10-14 >>END_MODULE