##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L002_R2_002.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.55645575 34.0 31.0 34.0 31.0 34.0 2 32.7290645 34.0 31.0 34.0 31.0 34.0 3 32.77196275 34.0 31.0 34.0 31.0 34.0 4 36.15580875 37.0 37.0 37.0 35.0 37.0 5 36.158804 37.0 37.0 37.0 35.0 37.0 6 36.1425125 37.0 37.0 37.0 35.0 37.0 7 36.134267 37.0 37.0 37.0 35.0 37.0 8 36.1105995 37.0 37.0 37.0 35.0 37.0 9 37.8676005 39.0 39.0 39.0 35.0 39.0 10-14 38.15755635 39.4 38.8 39.4 35.4 39.4 15-19 39.2986423 41.0 39.8 41.0 36.4 41.0 20-24 39.08692610000001 41.0 39.0 41.0 35.8 41.0 25-29 38.7159992 40.4 38.4 41.0 35.0 41.0 30-34 38.05025115 40.0 37.2 41.0 33.8 41.0 35-39 37.06929014999999 39.0 35.2 40.8 32.8 41.0 40-44 36.05985445 37.0 35.0 40.0 31.4 41.0 45-49 35.177570200000005 35.0 35.0 39.0 31.0 41.0 50-54 33.91727899999999 34.8 33.8 36.2 29.2 39.8 55-59 34.0942519 35.0 35.0 35.2 31.0 39.2 60-64 33.7164263 35.0 34.6 35.0 30.6 37.2 65-69 33.35645195 35.0 34.0 35.0 29.6 36.0 70-74 33.066029300000004 35.0 34.0 35.0 29.0 35.0 75-79 32.75708375000001 35.0 33.2 35.0 29.0 35.0 80-84 32.43458855 35.0 33.0 35.0 27.2 35.0 85-89 32.08650264999999 35.0 33.0 35.0 27.0 35.0 90-94 31.7123515 35.0 33.0 35.0 25.2 35.0 95-99 31.1298791 35.0 33.0 35.0 23.6 35.0 100-101 29.988123125 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 8339.0 3 1717.0 4 2083.0 5 2367.0 6 2757.0 7 3405.0 8 3926.0 9 4396.0 10 4625.0 11 4950.0 12 4944.0 13 4977.0 14 5131.0 15 5195.0 16 5578.0 17 6261.0 18 6935.0 19 8133.0 20 9340.0 21 11093.0 22 13312.0 23 16391.0 24 19623.0 25 24024.0 26 29054.0 27 35467.0 28 43323.0 29 53560.0 30 67533.0 31 86193.0 32 114071.0 33 160917.0 34 265599.0 35 638440.0 36 1361881.0 37 726132.0 38 199163.0 39 38912.0 40 253.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.634134735787626 22.971800651139493 19.020285499624343 27.37377911344854 2 30.742911581817246 23.569162546138482 22.05788780982809 23.63003806221618 3 29.333565956049323 21.718592929604426 21.00793386973395 27.9399072446123 4 31.19617562569545 20.49244250098983 19.415692228066934 28.895689645247792 5 30.77669847026868 19.801239792385207 19.3753286370818 30.046733100264312 6 30.216345095150203 19.0679764416667 18.29399270508442 32.421685758098675 7 32.05535444705618 18.937179399904696 19.115223824416265 29.89224232862286 8 29.622807026328204 19.29150890207864 19.798900846896665 31.286783224696496 9 30.442201860123987 18.269140991190007 19.528423150045246 31.760233998640764 10-14 30.59951864142419 19.252391619391183 19.368055377301474 30.780034361883157 15-19 30.688567826110187 19.127125871313684 19.274389804002638 30.909916498573487 20-24 30.650827681763293 19.146339029578403 19.297755606382324 30.905077682275984 25-29 30.744719715554798 19.229140175763778 19.234717866162743 30.791422242518678 30-34 30.821079492150854 19.10730627306273 19.126319344549376 30.94529489023704 35-39 30.72945134370773 19.159059258276994 19.218709350088115 30.89278004792716 40-44 30.82000317909011 19.183022858538195 19.14847101070957 30.848502951662127 45-49 30.856573353504015 19.091612117753137 19.0896566637945 30.96215786494835 50-54 30.749520394278296 19.14414981054605 19.191036255966782 30.915293539208875 55-59 30.803109983600365 19.1977728467106 19.1755945487004 30.82352262098864 60-64 30.835796714861296 19.13590571015013 19.087540581982545 30.94075699300603 65-69 30.726565 19.19565 19.2025 30.875285 70-74 30.7997 19.233705 19.176180000000002 30.790415 75-79 30.841363525535904 19.154456114117036 19.109852269265613 30.89432809108145 80-84 30.75313459171213 19.210109341111554 19.200478406429344 30.836277660746976 85-89 30.825424163646524 19.267073858967304 19.17523834009662 30.732263637289552 90-94 30.88032 19.165525 19.096455000000002 30.857699999999998 95-99 30.792945823126317 19.212049755361672 19.186956849603185 30.808047571908826 100-101 30.926048007765377 19.295610058834185 19.152097103223685 30.626244830176752 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.00791384923616 2 54.37294964403342 3 57.27347320066162 4 60.09186527094323 5 60.823431570532996 6 62.638030853248885 7 61.94759677567904 8 60.9095902510247 9 62.20243585876475 10-14 61.37955300330734 15-19 61.598484324683675 20-24 61.555905364039276 25-29 61.53614195807348 30-34 61.76637438238789 35-39 61.6222313916349 40-44 61.668506130752235 45-49 61.81873121845236 50-54 61.664813933487174 55-59 61.626632604589005 60-64 61.77655370786732 65-69 61.60185 70-74 61.590115 75-79 61.73569161661735 80-84 61.5894122524591 85-89 61.55768780093608 90-94 61.738020000000006 95-99 61.60099339503514 100-101 61.55229283794213 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 44.0 1 30.5 2 18.5 3 22.5 4 19.5 5 27.0 6 37.5 7 41.0 8 57.0 9 68.5 10 85.5 11 109.0 12 141.5 13 176.5 14 222.0 15 277.5 16 333.5 17 433.5 18 569.0 19 731.0 20 931.5 21 1118.0 22 1421.5 23 1858.5 24 2291.5 25 2863.5 26 3631.0 27 4477.0 28 5407.5 29 6540.0 30 7795.0 31 9066.5 32 10486.5 33 12093.5 34 13593.5 35 15012.5 36 16363.5 37 17555.5 38 18911.5 39 20167.0 40 21159.0 41 22202.0 42 23088.5 43 24077.5 44 25381.0 45 27098.0 46 29413.5 47 32038.0 48 35523.0 49 39798.0 50 44710.5 51 50866.5 52 58296.0 53 66487.5 54 75611.5 55 85676.5 56 95667.5 57 106044.5 58 117521.0 59 129464.0 60 141775.5 61 154490.5 62 167023.0 63 178033.5 64 187340.0 65 194751.0 66 199234.5 67 199611.5 68 195604.5 69 187181.0 70 174172.5 71 157422.5 72 137342.5 73 115755.0 74 94587.5 75 73712.0 76 54306.5 77 38447.5 78 25660.0 79 15824.5 80 9109.5 81 4992.5 82 2704.5 83 1498.5 84 958.0 85 661.5 86 495.5 87 400.5 88 321.5 89 268.0 90 221.0 91 180.0 92 162.0 93 138.0 94 112.0 95 90.5 96 81.0 97 66.0 98 46.0 99 39.0 100 32.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.17500000000000002 2 0.12405000000000001 3 0.12440000000000001 4 0.10915 5 0.108275 6 0.0948 7 0.1092 8 0.1413 9 0.12762500000000002 10-14 0.07241500000000001 15-19 0.06039 20-24 0.037365 25-29 0.048235 30-34 0.06874999999999999 35-39 0.042065 40-44 0.03429 45-49 0.023215 50-54 0.035075 55-59 0.037415000000000004 60-64 2.65E-4 65-69 0.0 70-74 0.0 75-79 0.00862 80-84 0.009705 85-89 5.65E-4 90-94 0.0 95-99 0.01158 100-101 0.0177375 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.29288723841320025 #Duplication Level Relative count 1 100.0 2 0.24763021890711862 3 0.003508930227428806 4 5.012757467755438E-4 5 0.0010025514935510875 6 0.0 7 0.0 8 0.0 9 5.012757467755438E-4 10++ 0.002005102987102175 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 381350 3.6782892 4.205486 60-64 TTTTT 372440 3.64654 4.082283 10-14 >>END_MODULE