##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L002_R2_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.49143525 34.0 31.0 34.0 31.0 34.0 2 32.6711365 34.0 31.0 34.0 31.0 34.0 3 32.7085965 34.0 31.0 34.0 31.0 34.0 4 36.088495 37.0 37.0 37.0 35.0 37.0 5 36.0872345 37.0 37.0 37.0 35.0 37.0 6 36.081318 37.0 37.0 37.0 35.0 37.0 7 36.075447 37.0 37.0 37.0 35.0 37.0 8 36.06063025 37.0 37.0 37.0 35.0 37.0 9 37.83287625 39.0 39.0 39.0 35.0 39.0 10-14 38.12475965 39.4 38.6 39.4 35.2 39.4 15-19 39.2637253 41.0 39.6 41.0 36.0 41.0 20-24 39.0601972 41.0 39.0 41.0 35.6 41.0 25-29 38.6832865 40.2 38.4 41.0 35.0 41.0 30-34 37.9980596 40.0 37.2 41.0 33.4 41.0 35-39 37.03063055 38.8 35.2 40.8 32.6 41.0 40-44 36.023795199999995 37.0 35.0 40.0 31.2 41.0 45-49 35.10650665 35.0 35.0 38.8 30.6 41.0 50-54 33.84563415000001 34.8 33.4 36.2 28.6 39.8 55-59 34.05138635 35.0 35.0 35.2 31.0 39.2 60-64 33.6686769 35.0 34.4 35.0 30.2 37.2 65-69 33.3379122 35.0 34.0 35.0 29.6 36.0 70-74 33.03784674999999 35.0 34.0 35.0 29.0 35.0 75-79 32.7278323 35.0 33.2 35.0 28.4 35.0 80-84 32.395687499999994 35.0 33.0 35.0 27.0 35.0 85-89 32.0896275 35.0 33.0 35.0 27.0 35.0 90-94 31.69766655 35.0 33.0 35.0 25.0 35.0 95-99 31.11964365 35.0 33.0 35.0 23.4 35.0 100-101 30.039827875 34.0 31.0 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 8052.0 3 1777.0 4 1963.0 5 2362.0 6 2812.0 7 3441.0 8 4168.0 9 4582.0 10 4874.0 11 5088.0 12 5150.0 13 5284.0 14 5141.0 15 5305.0 16 5657.0 17 6349.0 18 7082.0 19 7986.0 20 9592.0 21 11575.0 22 13757.0 23 16309.0 24 20278.0 25 24727.0 26 29627.0 27 36637.0 28 44747.0 29 55911.0 30 69309.0 31 88661.0 32 117648.0 33 164784.0 34 267246.0 35 626934.0 36 1344132.0 37 732093.0 38 199280.0 39 39428.0 40 252.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.597662665840218 22.960459516477062 19.050248398462163 27.39162941922056 2 30.724712113107948 23.60227829295881 22.063516122041747 23.60949347189149 3 29.307894355835412 21.744684752294102 21.016163042176807 27.931257849693676 4 31.21655851833445 20.531391406115358 19.412416884766916 28.839633190783275 5 30.721227823955516 19.823643858500215 19.46964887605967 29.985479441484603 6 30.172491031577557 19.045515588562264 18.314301974679694 32.46769140518049 7 32.10640975224142 18.91352893453824 19.130731030111665 29.849330283108678 8 29.57946199495683 19.3648868691279 19.833553312810817 31.222097823104455 9 30.43257802406932 18.279338456602297 19.54021722753831 31.74786629179007 10-14 30.580068441120567 19.275761119405622 19.385937144380126 30.758233295093685 15-19 30.66580704618021 19.146055516450573 19.298948447180862 30.88918899018836 20-24 30.62326629316851 19.169584058388775 19.32385858653346 30.88329106190925 25-29 30.7217077633385 19.240082681267097 19.24659888448402 30.791610670910387 30-34 30.805818096540534 19.10081670536707 19.167994226004808 30.925370972087592 35-39 30.727457706726497 19.176409624088908 19.208570535264382 30.887562133920216 40-44 30.797167325230546 19.200032403143105 19.185701012998262 30.81709925862809 45-49 30.84283862704152 19.1075816889734 19.104941572676275 30.9446381113088 50-54 30.717615682314992 19.16953571862176 19.2231898070633 30.889658791999953 55-59 30.796136442415566 19.22964567687464 19.173786085216204 30.800431795493587 60-64 30.826005000000002 19.13353 19.11515 30.925314999999998 65-69 30.74073 19.196365 19.214190000000002 30.848715 70-74 30.783135 19.2638 19.190034999999998 30.76303 75-79 30.833739666991733 19.15800532640426 19.133765307012247 30.874489699591763 80-84 30.739902292386322 19.217459067030042 19.234959535167565 30.80767910541607 85-89 30.81251 19.275515 19.19113 30.720845 90-94 30.88066 19.15521 19.11417 30.84996 95-99 30.77557773514971 19.224519765508415 19.212374683529113 30.787527815812755 100-101 30.924579118013458 19.34199634849361 19.131320979811715 30.60210355368122 >>END_MODULE >>Per base GC content warn #Base %GC 1 57.989292085060775 2 54.33420558499944 3 57.23915220552909 4 60.056191709117726 5 60.706707265440116 6 62.64018243675804 7 61.95574003535009 8 60.80155981806128 9 62.1804443158594 10-14 61.33830173621425 15-19 61.55499603636857 20-24 61.50655735507776 25-29 61.51331843424889 30-34 61.731189068628126 35-39 61.61501984064671 40-44 61.61426658385864 45-49 61.78747673835032 50-54 61.60727447431494 55-59 61.59656823790915 60-64 61.75132 65-69 61.589445 70-74 61.546164999999995 75-79 61.70822936658349 80-84 61.54758139780239 85-89 61.533355 90-94 61.73062 95-99 61.56310555096247 100-101 61.52668267169468 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 29.0 1 20.5 2 14.5 3 20.0 4 22.0 5 22.0 6 23.0 7 30.0 8 45.0 9 60.0 10 69.0 11 80.0 12 104.0 13 136.0 14 194.0 15 241.5 16 306.0 17 395.5 18 502.0 19 659.5 20 880.0 21 1128.0 22 1418.0 23 1821.0 24 2271.5 25 2865.0 26 3674.5 27 4470.5 28 5450.5 29 6677.5 30 7853.5 31 9189.0 32 10667.5 33 12139.5 34 13623.5 35 15105.5 36 16592.5 37 17933.0 38 19175.5 39 20276.0 40 21311.5 41 22422.0 42 23372.0 43 24201.0 44 25540.5 45 27552.5 46 29709.5 47 32423.5 48 35802.0 49 39998.0 50 45165.5 51 51215.0 52 58629.5 53 66795.0 54 75492.5 55 84995.0 56 95618.0 57 106665.0 58 117628.5 59 129766.5 60 142073.5 61 153983.5 62 166161.0 63 177783.0 64 187349.5 65 195117.0 66 199597.5 67 198937.0 68 194629.5 69 186156.0 70 173461.0 71 156856.5 72 136989.0 73 115853.0 74 94426.0 75 73626.0 76 54465.0 77 38131.5 78 25430.0 79 15856.0 80 9148.5 81 5002.5 82 2627.5 83 1506.5 84 924.5 85 627.0 86 510.0 87 411.5 88 339.0 89 274.0 90 244.0 91 224.5 92 170.0 93 140.5 94 121.5 95 94.0 96 83.5 97 69.0 98 53.0 99 38.0 100 26.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.256025 2 0.210375 3 0.19515 4 0.19880000000000003 5 0.21045 6 0.10785 7 0.127575 8 0.14220000000000002 9 0.10935 10-14 0.064465 15-19 0.041159999999999995 20-24 0.019139999999999997 25-29 0.018465 30-34 0.04841 35-39 0.01838 40-44 0.0097 45-49 0.004405 50-54 0.007619999999999999 55-59 0.00822 60-64 0.0 65-69 0.0 70-74 0.0 75-79 7.999999999999999E-5 80-84 0.002675 85-89 0.0 90-94 0.0 95-99 6.749999999999999E-4 100-101 1.75E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.36679459502678363 #Duplication Level Relative count 1 100.0 2 0.2999327909799476 3 0.007021837915918506 4 0.0025077992556851807 5 5.015598511370362E-4 6 5.015598511370362E-4 7 0.0 8 0.0010031197022740725 9 0.0 10++ 5.015598511370362E-4 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 389145 3.739521 4.2544765 60-64 TTTTT 373625 3.6425934 3.9629278 10-14 >>END_MODULE