##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L002_R1_010.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 310019 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.45154006689913 34.0 31.0 34.0 31.0 34.0 2 32.74482531715798 34.0 31.0 34.0 31.0 34.0 3 32.79797689819011 34.0 31.0 34.0 31.0 34.0 4 36.279637699624864 37.0 37.0 37.0 35.0 37.0 5 36.12384402246314 37.0 37.0 37.0 35.0 37.0 6 36.12298601053484 37.0 37.0 37.0 35.0 37.0 7 36.10187762685513 37.0 36.0 37.0 35.0 37.0 8 36.12662449720823 37.0 37.0 37.0 35.0 37.0 9 37.83832281247278 39.0 38.0 39.0 35.0 39.0 10-14 38.09686761133995 39.4 38.2 39.4 35.2 39.4 15-19 39.12970430844561 40.4 39.0 41.0 36.0 41.0 20-24 38.949905005822224 40.0 38.4 41.0 35.0 41.0 25-29 38.4437489315171 40.0 38.0 41.0 34.0 41.0 30-34 37.75605043561846 39.8 36.6 41.0 33.0 41.0 35-39 36.55443247026795 38.2 35.0 40.2 31.0 41.0 40-44 35.29030091704057 36.2 34.6 39.6 29.0 41.0 45-49 35.05600301916979 35.0 34.8 38.8 30.8 41.0 50-54 33.50695538015411 35.0 33.4 36.2 25.8 39.6 55-59 33.35437053857989 35.0 33.0 35.0 27.4 38.6 60-64 33.206321548034154 35.0 33.0 35.0 27.6 36.6 65-69 32.81396043468304 35.0 33.0 35.0 27.6 35.6 70-74 32.579272883274896 35.0 33.0 35.0 27.0 35.0 75-79 31.847502249862107 34.4 32.4 35.0 26.2 35.0 80-84 32.06815388734238 35.0 33.0 35.0 27.0 35.0 85-89 31.753641551001714 35.0 33.0 35.0 25.6 35.0 90-94 31.30208019508482 34.6 32.2 35.0 24.2 35.0 95-99 30.71815920959683 34.0 31.2 35.0 22.2 35.0 100-101 29.17615533241511 33.5 29.0 34.5 10.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 4 2.0 5 8.0 6 28.0 7 80.0 8 179.0 9 280.0 10 390.0 11 473.0 12 489.0 13 508.0 14 522.0 15 561.0 16 591.0 17 622.0 18 662.0 19 733.0 20 779.0 21 934.0 22 1124.0 23 1446.0 24 1756.0 25 2324.0 26 2873.0 27 3561.0 28 4559.0 29 5752.0 30 7189.0 31 9022.0 32 11740.0 33 16177.0 34 26678.0 35 60180.0 36 95688.0 37 40804.0 38 10171.0 39 1130.0 40 4.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.19328113355465 22.76949184257476 19.57911105519046 27.45811596868013 2 30.350397878839686 23.059876975282158 22.950206277679754 23.6395188681984 3 28.49922101548615 21.92543037684787 22.217025408120147 27.358323199545836 4 30.535225260387268 20.873236801615384 20.274886377931676 28.316651560065676 5 30.87520442295472 19.70846948090278 19.448485415410026 29.967840680732472 6 30.00945103364632 19.233014750708826 18.76723684677391 31.99029736887094 7 32.01384431276792 19.050767856163656 19.28268912550521 29.652698705563207 8 29.803334634328866 19.254948890229308 19.827494443888924 31.114222031552906 9 30.11976685299933 18.45951377173657 19.927488315232292 31.493231060031807 10-14 30.55238549895329 19.247981575322804 19.480935039465322 30.71869788625858 15-19 30.591479877039795 19.244949503094972 19.340556546534245 30.823014073330988 20-24 30.614958513090585 19.235397001432897 19.37139638724212 30.778248098234396 25-29 30.671236712096167 19.294829861930953 19.316957552251672 30.716975873721207 30-34 30.732284160878276 19.225081508706634 19.23263369138425 30.810000639030843 35-39 30.756463362929853 19.251183678052474 19.29151617268503 30.70083678633264 40-44 31.296131756070082 19.18855212989257 19.045563447033857 30.46975266700349 45-49 30.82385273160677 19.154761482360758 19.147923191804374 30.873462594228094 50-54 31.273760640476873 19.28752753863473 19.075605043561847 30.36310677732655 55-59 30.74959921811244 19.24462694221967 19.275334737548345 30.73043910211955 60-64 30.815662411193777 19.171305364373254 19.181756950304642 30.831275274128323 65-69 30.73470019741681 19.22600998696791 19.29678326731268 30.7425065483026 70-74 30.865527596695685 19.20862914853606 19.231918043732804 30.69392521103545 75-79 30.78553249962099 19.219144633070876 19.20398427193172 30.79133859537641 80-84 30.686441798728463 19.250110477099792 19.324493014944245 30.7389547092275 85-89 30.818756269777015 19.26094852250991 19.272818762720995 30.647476444992083 90-94 30.827004605975834 19.197415646897984 19.17522128233103 30.800358464795156 95-99 30.721988007186656 19.267335227840874 19.291785342188707 30.718891422783766 100-101 31.145994277770072 19.175921475780516 19.1178605182263 30.560223728223107 >>END_MODULE >>Per base GC content warn #Base %GC 1 57.65139710223478 2 53.98991674703808 3 55.857544215031986 4 58.851876820452944 5 60.843045103687196 6 61.99974840251726 7 61.66654301833113 8 60.91755666588177 9 61.612997913031144 10-14 61.27108338521188 15-19 61.41449395037078 20-24 61.39320661132498 25-29 61.38821258581738 30-34 61.54228479990912 35-39 61.457300149262494 40-44 61.76588442307357 45-49 61.697315325834865 50-54 61.63686741780342 55-59 61.48003832023199 60-64 61.6469376853221 65-69 61.477206745719414 70-74 61.55945280773114 75-79 61.5768710949974 80-84 61.425396507955966 85-89 61.4662327147691 90-94 61.62736307077099 95-99 61.440879429970416 100-101 61.706218005993186 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2.0 1 2.5 2 2.0 3 1.5 4 2.0 5 1.0 6 1.5 7 3.0 8 2.0 9 2.0 10 4.5 11 7.0 12 8.5 13 8.0 14 10.0 15 19.5 16 26.5 17 31.0 18 39.0 19 54.0 20 76.0 21 90.0 22 106.0 23 134.5 24 178.0 25 232.5 26 281.0 27 339.0 28 403.0 29 506.0 30 579.5 31 633.5 32 768.0 33 919.0 34 1064.0 35 1188.0 36 1280.5 37 1399.5 38 1499.0 39 1569.0 40 1668.5 41 1738.0 42 1803.5 43 1857.5 44 1942.5 45 2119.0 46 2284.5 47 2564.0 48 2841.0 49 3114.0 50 3583.0 51 4098.0 52 4650.5 53 5343.0 54 6075.5 55 6721.5 56 7535.5 57 8424.0 58 9265.5 59 10245.0 60 11161.0 61 12050.5 62 12983.5 63 13928.5 64 14754.0 65 15139.0 66 15435.0 67 15502.5 68 15022.5 69 14267.5 70 13258.5 71 11941.0 72 10436.0 73 8854.5 74 7201.5 75 5581.5 76 4094.5 77 2800.5 78 1794.0 79 1115.0 80 650.0 81 342.0 82 166.0 83 71.5 84 36.0 85 24.0 86 18.5 87 16.5 88 9.0 89 5.0 90 3.5 91 3.0 92 2.5 93 1.0 94 0.0 95 0.0 96 0.5 97 1.5 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.01806340901686671 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.005677071405300965 25-29 6.451217506023825E-5 30-34 0.05638364100264823 35-39 0.030707795328673404 40-44 0.020772920369396715 45-49 0.0 50-54 0.0 55-59 0.0 60-64 0.00587060793048168 65-69 0.004838413129517868 70-74 0.0 75-79 0.0 80-84 0.0 85-89 0.0 90-94 0.009805850609156213 95-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 310019.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.07297336472188286 #Duplication Level Relative count 1 100.0 2 0.03551296223121439 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.001000365133273645 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 29980 3.664568 4.565235 1 AAAAA 29155 3.576553 4.271223 70-74 >>END_MODULE