##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L002_R1_009.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.62332325 34.0 31.0 34.0 31.0 34.0 2 32.9006575 34.0 31.0 34.0 31.0 34.0 3 32.94731025 34.0 31.0 34.0 31.0 34.0 4 36.38236 37.0 37.0 37.0 35.0 37.0 5 36.302656 37.0 37.0 37.0 35.0 37.0 6 36.28007025 37.0 37.0 37.0 35.0 37.0 7 36.27655975 37.0 37.0 37.0 35.0 37.0 8 36.261674 37.0 37.0 37.0 35.0 37.0 9 38.0371605 39.0 38.0 39.0 35.0 39.0 10-14 38.2945223 39.4 38.4 39.4 35.4 39.4 15-19 39.43420965 41.0 39.4 41.0 36.4 41.0 20-24 39.2060915 40.6 39.0 41.0 35.8 41.0 25-29 38.677590949999995 40.0 38.2 41.0 34.6 41.0 30-34 37.513464250000006 39.8 36.6 41.0 32.2 41.0 35-39 36.9857304 38.6 35.0 40.4 32.4 41.0 40-44 36.11746595 36.8 35.0 40.0 31.4 41.0 45-49 35.3995872 35.0 35.0 39.0 31.6 41.0 50-54 34.45173205 35.0 34.6 36.6 30.4 40.2 55-59 33.7635365 35.0 34.0 35.0 29.6 38.8 60-64 33.507086949999994 35.0 33.6 35.0 29.6 37.0 65-69 33.1266498 35.0 33.0 35.0 29.0 35.8 70-74 32.7726512 35.0 33.0 35.0 29.0 35.0 75-79 32.23362315 34.6 32.6 35.0 27.0 35.0 80-84 32.407108750000006 35.0 33.0 35.0 27.0 35.0 85-89 31.437903549999998 35.0 32.2 35.0 23.2 35.0 90-94 31.3744215 35.0 32.6 35.0 24.0 35.0 95-99 31.052610749999996 35.0 32.6 35.0 23.6 35.0 100-101 29.696671000000002 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 39.0 3 9.0 4 33.0 5 94.0 6 319.0 7 898.0 8 2130.0 9 3504.0 10 4297.0 11 4919.0 12 5168.0 13 5423.0 14 5941.0 15 6348.0 16 7052.0 17 7635.0 18 8250.0 19 8909.0 20 9930.0 21 11195.0 22 13179.0 23 16411.0 24 20558.0 25 25793.0 26 32179.0 27 40434.0 28 50717.0 29 62686.0 30 78392.0 31 99190.0 32 130337.0 33 184468.0 34 314418.0 35 739906.0 36 1304973.0 37 612157.0 38 160174.0 39 21870.0 40 65.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.495576557580257 22.607358420091277 19.37806794595565 27.51899707637282 2 30.434175000000003 22.947525 22.841900000000003 23.7764 3 28.675024999999998 21.79605 22.006025 27.5229 4 30.642975 20.68695 20.237 28.433075000000002 5 30.80585 19.717875000000003 19.510925 29.96535 6 30.049225 19.22355 18.637725 32.0895 7 31.909625000000002 19.05725 19.24605 29.787075 8 29.696025 19.265874999999998 19.771749999999997 31.26635 9 30.305775 18.420575 19.75975 31.5139 10-14 30.55727 19.28237 19.429915 30.730445 15-19 30.631570000000004 19.17893 19.34425 30.84525 20-24 30.606306637905384 19.19180216377681 19.3622737302726 30.839617468045205 25-29 30.814391573841636 19.26419915705216 19.268289195089512 30.653120074016687 30-34 31.19717423932856 19.125991587810525 19.09655783182607 30.58027634103485 35-39 30.702740406795638 19.216418433004918 19.266354592346083 30.814486567853354 40-44 30.83177594864606 19.235467062876666 19.205101187079702 30.727655801397567 45-49 30.941000000000003 19.121805 19.169115 30.768079999999998 50-54 30.837594251278276 19.19714075914223 19.22417076725123 30.741094222328268 55-59 30.899824999999996 19.2292 19.19489 30.676084999999997 60-64 30.814345699111694 19.16213072765753 19.191235148619075 30.832288424611697 65-69 30.762208685504426 19.213826953662952 19.251984916628775 30.77197944420384 70-74 30.83963 19.25927 19.19498 30.70612 75-79 30.83953 19.170505 19.193125 30.796839999999996 80-84 30.770804618689702 19.22222036666277 19.242410409061858 30.76456460558567 85-89 30.854369254379215 19.259979393342647 19.190727184197176 30.694924168080963 90-94 30.87780772102341 19.156522273990866 19.157152365669205 30.80851763931652 95-99 30.804295 19.198755000000002 19.228355 30.768594999999998 100-101 31.104375 19.2280625 19.0962125 30.571350000000002 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.014573633953084 2 54.210575000000006 3 56.197925000000005 4 59.07605 5 60.7712 6 62.138724999999994 7 61.69670000000001 8 60.962375 9 61.819675 10-14 61.287715 15-19 61.47682 20-24 61.44592410595059 25-29 61.46751164785833 30-34 61.777450580363414 35-39 61.517226974649 40-44 61.559431750043636 45-49 61.70908000000001 50-54 61.57868847360655 55-59 61.57591 60-64 61.6466341237234 65-69 61.53418812970827 70-74 61.54575 75-79 61.63637 80-84 61.53536922427537 85-89 61.549293422460174 90-94 61.686325360339936 95-99 61.57289 100-101 61.675725 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 18.0 1 14.0 2 8.5 3 14.5 4 18.5 5 15.0 6 19.0 7 25.0 8 31.5 9 38.5 10 55.5 11 83.5 12 103.5 13 119.5 14 167.5 15 218.0 16 277.5 17 387.5 18 471.0 19 605.5 20 812.0 21 1033.0 22 1319.5 23 1730.0 24 2237.5 25 2776.0 26 3439.5 27 4305.5 28 5289.5 29 6412.0 30 7732.5 31 9111.5 32 10637.5 33 12138.0 34 13423.5 35 14926.0 36 16434.0 37 17758.5 38 19098.5 39 20312.5 40 21307.5 41 22300.0 42 23350.0 43 24292.5 44 25643.5 45 27409.0 46 29546.0 47 32450.0 48 36199.5 49 40604.0 50 46085.5 51 52516.5 52 59660.5 53 67936.0 54 76774.5 55 86370.0 56 96940.5 57 107876.0 58 119015.0 59 130857.0 60 143115.0 61 155111.5 62 167098.0 63 178340.5 64 187665.5 65 194635.5 66 199370.0 67 199573.5 68 194514.0 69 185364.5 70 172300.0 71 155508.0 72 135812.0 73 114681.0 74 93130.0 75 72398.5 76 53736.0 77 37798.0 78 24897.0 79 15350.0 80 8702.5 81 4597.5 82 2331.5 83 1197.0 84 653.0 85 425.0 86 295.5 87 194.0 88 140.0 89 95.5 90 68.5 91 51.0 92 36.0 93 30.0 94 18.0 95 9.0 96 7.5 97 4.5 98 1.5 99 0.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.00435 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.006784999999999999 25-29 9.3E-4 30-34 0.08071 35-39 0.03236 40-44 0.01935 45-49 0.0 50-54 2.9999999999999997E-5 55-59 0.0 60-64 0.01519 65-69 0.007765 70-74 0.0 75-79 0.0 80-84 2.0999999999999998E-4 85-89 0.00319 90-94 0.01455 95-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.2519294597512577 #Duplication Level Relative count 1 100.0 2 0.2149815586914689 3 0.003507857601026299 4 0.0020044900577293138 5 0.0015033675432969853 6 5.011225144323284E-4 7 0.0 8 0.0 9 0.0010022450288646569 10++ 0.0010022450288646569 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 373620 3.589794 4.171567 70-74 TTTTT 370770 3.5641072 3.9923713 90-94 >>END_MODULE