##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L002_R1_008.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.756234 34.0 31.0 34.0 31.0 34.0 2 33.0174675 34.0 31.0 34.0 31.0 34.0 3 33.06059625 34.0 31.0 34.0 31.0 34.0 4 36.46001925 37.0 37.0 37.0 35.0 37.0 5 36.39440675 37.0 37.0 37.0 35.0 37.0 6 36.37181325 37.0 37.0 37.0 35.0 37.0 7 36.36971625 37.0 37.0 37.0 35.0 37.0 8 36.35864975 37.0 37.0 37.0 35.0 37.0 9 38.152439 39.0 39.0 39.0 37.0 39.0 10-14 38.41107175 39.4 38.8 39.4 37.0 39.4 15-19 39.5550893 41.0 40.0 41.0 37.0 41.0 20-24 39.1669948 40.8 39.0 41.0 35.8 41.0 25-29 37.1852894 40.0 36.2 41.0 28.6 41.0 30-34 35.452630750000004 39.2 34.4 40.8 22.2 41.0 35-39 36.58979435 38.6 35.0 40.0 31.4 41.0 40-44 30.536706900000002 29.2 24.8 38.2 21.0 40.6 45-49 33.337697649999996 34.2 31.4 37.4 26.8 40.0 50-54 32.662225 35.0 31.8 36.2 22.2 39.6 55-59 31.154229799999996 34.8 29.6 35.0 17.8 37.8 60-64 33.2320057 35.0 33.0 35.0 28.2 36.8 65-69 32.96402245 35.0 33.0 35.0 29.0 35.6 70-74 31.463299099999993 35.0 31.8 35.0 21.4 35.0 75-79 31.70343415 34.4 32.2 35.0 24.8 35.0 80-84 31.691281800000002 35.0 32.4 35.0 25.0 35.0 85-89 31.861046499999997 35.0 33.0 35.0 26.2 35.0 90-94 31.427070000000004 35.0 33.0 35.0 24.2 35.0 95-99 30.7895058 35.0 32.0 35.0 22.2 35.0 100-101 29.389400875 34.0 30.0 35.0 10.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 27.0 3 9.0 4 44.0 5 120.0 6 381.0 7 1292.0 8 3288.0 9 5312.0 10 6280.0 11 7793.0 12 8306.0 13 7751.0 14 7067.0 15 6935.0 16 7481.0 17 7829.0 18 8633.0 19 9395.0 20 10474.0 21 12039.0 22 14804.0 23 18358.0 24 24253.0 25 30804.0 26 38994.0 27 49435.0 28 61761.0 29 79233.0 30 104790.0 31 146404.0 32 234104.0 33 421876.0 34 682535.0 35 775880.0 36 762135.0 37 339810.0 38 91187.0 39 13128.0 40 53.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.486162737400708 22.533459461932992 19.394447691013937 27.585930109652363 2 30.486925 22.94195 22.783800000000003 23.787325 3 28.656825 21.746025 21.9938 27.60335 4 30.650425 20.6316 20.1855 28.532475 5 30.829800000000002 19.73955 19.50095 29.929699999999997 6 30.07725 19.210250000000002 18.64695 32.06555 7 31.905375000000003 19.07275 19.2418 29.780075 8 29.679475 19.28435 19.785249999999998 31.250925000000002 9 30.323575 18.4194 19.76005 31.496975 10-14 30.56774 19.28954 19.441924999999998 30.700794999999996 15-19 30.660739999999997 19.172629999999998 19.33332 30.833310000000004 20-24 30.906661994481183 19.17226113876721 19.273680165102554 30.647396701649054 25-29 31.0890485339863 19.12215129977186 19.08905093401282 30.699749232229017 30-34 31.173533553843903 19.180235205043385 19.08285189975676 30.563379341355954 35-39 30.88919343788545 19.258968709832793 19.195023756305414 30.656814095976344 40-44 35.15843088521907 18.199439444908702 17.9887879783433 28.653341691528926 45-49 30.90196 19.162805 19.21901 30.716225 50-54 31.12119014840355 19.236306174332846 19.150710857630173 30.491792819633435 55-59 30.91660763193054 19.356799696133702 19.170668343854302 30.555924328081456 60-64 30.864849994606523 19.17231923116488 19.152505645896625 30.81032512833197 65-69 30.76746599404576 19.204338952892183 19.251248200524557 30.776946852537495 70-74 30.92882 19.391575 19.10763 30.571975000000002 75-79 30.83241 19.28472 19.13617 30.7467 80-84 30.801411602823205 19.23590847181694 19.229733459466917 30.73294646589293 85-89 30.866779765971643 19.210939337597026 19.181967807900257 30.740313088531074 90-94 30.88553827372123 19.127591506265063 19.1403537224239 30.846516497589803 95-99 30.848039254411773 19.178945753683728 19.189085756725728 30.78392923517877 100-101 31.166325 19.1455375 19.0537875 30.634349999999998 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.07209284705307 2 54.27425 3 56.260175000000004 4 59.182900000000004 5 60.7595 6 62.1428 7 61.685449999999996 8 60.9304 9 61.82055 10-14 61.268535 15-19 61.49405 20-24 61.554058696130234 25-29 61.78879776621532 30-34 61.73691289519986 35-39 61.54600753386179 40-44 63.81177257674799 45-49 61.618185000000004 50-54 61.61298296803698 55-59 61.47253196001199 60-64 61.6751751229385 65-69 61.54441284658326 70-74 61.500795 75-79 61.57911 80-84 61.53435806871613 85-89 61.607092854502724 90-94 61.73205477131104 95-99 61.63196848959055 100-101 61.800675000000005 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 12.0 1 13.0 2 12.5 3 15.0 4 17.0 5 18.0 6 18.0 7 23.0 8 29.5 9 39.0 10 49.0 11 58.5 12 90.0 13 112.5 14 132.0 15 193.5 16 258.5 17 339.5 18 427.5 19 528.5 20 709.0 21 905.5 22 1193.5 23 1591.5 24 2051.0 25 2579.5 26 3223.0 27 4001.5 28 4920.0 29 6081.5 30 7250.0 31 8571.5 32 9987.5 33 11511.5 34 13119.5 35 14648.5 36 16247.5 37 17564.5 38 18744.5 39 20041.5 40 21167.5 41 22068.0 42 23154.5 43 24432.0 44 25843.5 45 27721.5 46 30101.0 47 32932.5 48 36476.5 49 40880.0 50 46235.5 51 52863.0 52 60402.5 53 68547.5 54 77703.5 55 87793.5 56 98562.0 57 110112.5 58 121587.5 59 133455.5 60 145784.0 61 158399.5 62 170655.5 63 181071.5 64 190330.5 65 196900.5 66 199991.0 67 200064.5 68 194830.5 69 184188.0 70 170127.0 71 152952.0 72 132655.5 73 110736.0 74 89104.0 75 68778.5 76 50616.5 77 35331.0 78 23265.0 79 14357.0 80 8459.0 81 4849.0 82 2661.0 83 1475.5 84 912.5 85 606.5 86 422.0 87 325.0 88 246.0 89 171.5 90 124.0 91 91.5 92 63.0 93 44.0 94 23.0 95 8.5 96 8.5 97 6.0 98 2.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.022675 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.0039700000000000004 25-29 0.0011049999999999999 30-34 1.892835 35-39 0.023385 40-44 2.155915 45-49 0.0 50-54 3.7E-4 55-59 1.85157 60-64 0.018095 65-69 0.009055 70-74 0.0 75-79 0.0 80-84 1.9999999999999998E-4 85-89 0.00528 90-94 0.017365 95-99 2.9999999999999997E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.04299527052023914 #Duplication Level Relative count 1 100.0 2 0.02750880281690141 3 0.0010003201024327785 4 0.0010003201024327785 5 0.0 6 5.001600512163892E-4 7 0.0 8 0.0 9 0.0 10++ 0.002000640204865557 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 346635 3.4684598 4.1643605 95-97 AAAAA 350510 3.4517827 4.186316 70-74 >>END_MODULE