##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L002_R1_007.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.815842 34.0 31.0 34.0 31.0 34.0 2 33.071896 34.0 31.0 34.0 31.0 34.0 3 33.0475185 34.0 33.0 34.0 31.0 34.0 4 36.4726545 37.0 37.0 37.0 35.0 37.0 5 36.4266115 37.0 37.0 37.0 35.0 37.0 6 36.4173445 37.0 37.0 37.0 35.0 37.0 7 36.41924125 37.0 37.0 37.0 35.0 37.0 8 36.406743 37.0 37.0 37.0 35.0 37.0 9 38.22744225 39.0 39.0 39.0 37.0 39.0 10-14 38.13890445 39.4 38.6 39.4 36.0 39.4 15-19 39.28452754999999 41.0 39.4 41.0 36.4 41.0 20-24 39.245516499999994 41.0 39.0 41.0 36.0 41.0 25-29 36.86555525 39.6 36.0 41.0 27.2 41.0 30-34 32.73954315 37.2 27.8 40.2 16.0 41.0 35-39 35.09988205 37.8 34.0 40.0 26.2 41.0 40-44 23.8990699 25.4 20.2 29.2 11.8 31.6 45-49 30.468160649999998 32.2 28.8 35.0 20.2 37.8 50-54 32.965664149999995 35.0 33.0 36.2 23.4 39.8 55-59 30.2427079 34.8 28.2 35.0 14.4 37.2 60-64 32.51322605 35.0 33.0 35.0 26.0 36.4 65-69 31.38383515 35.0 31.8 35.0 20.6 35.4 70-74 30.9636725 35.0 31.0 35.0 20.4 35.0 75-79 31.2113403 34.4 32.0 35.0 23.2 35.0 80-84 31.888854699999996 35.0 33.0 35.0 26.4 35.0 85-89 30.50184975 34.6 30.2 35.0 20.0 35.0 90-94 30.8036887 34.6 31.4 35.0 22.6 35.0 95-99 29.900931800000002 34.6 31.0 35.0 12.8 35.0 100-101 27.2520995 33.0 26.5 34.5 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 29.0 3 5.0 4 54.0 5 152.0 6 419.0 7 1471.0 8 4292.0 9 7930.0 10 9384.0 11 10587.0 12 10954.0 13 9210.0 14 7902.0 15 8476.0 16 8526.0 17 8354.0 18 9385.0 19 10631.0 20 11797.0 21 13860.0 22 17346.0 23 23187.0 24 29927.0 25 38696.0 26 50361.0 27 66507.0 28 88957.0 29 118580.0 30 159716.0 31 232492.0 32 375955.0 33 630172.0 34 892703.0 35 747737.0 36 297557.0 37 83051.0 38 12748.0 39 887.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.579047820034823 22.49372203734297 19.300343784560674 27.626886358061537 2 30.505300000000002 22.913475 22.72225 23.858974999999997 3 29.0238 21.649874999999998 21.876625 27.4497 4 30.680524999999996 20.627675 20.148075 28.543725 5 30.856699999999996 19.73545 19.508225000000003 29.899625 6 30.028125 19.22675 18.651375 32.09375 7 31.916825 19.040275 19.207825 29.835075 8 29.677274999999998 19.31765 19.764675 31.2404 9 30.259275000000002 18.4381 19.79105 31.511574999999997 10-14 30.760057690014424 19.284064821016205 19.32819483204871 30.627682656920662 15-19 30.685585 19.138915 19.288275 30.887225 20-24 30.82947542361339 19.185664876164548 19.28239679145647 30.702462908765593 25-29 31.457404602214528 19.09300257484205 19.05632126348517 30.393271559458253 30-34 32.495528579204446 19.12887941712479 18.53014197073365 29.84545003293711 35-39 31.747563697804615 19.202138847247184 18.9688625182362 30.081434936711997 40-44 40.59822975617634 17.313315793783403 16.3033591570769 25.785095292963362 45-49 31.205885 19.2059 19.18051 30.407705 50-54 31.337997605597128 19.427808313369976 19.09098290917949 30.143211171853405 55-59 31.410952564381027 19.75051790020716 18.990242596097037 29.84828693931478 60-64 31.00285708098417 19.22111772296942 19.10409278213831 30.6719324139081 65-69 31.063945534412767 19.55696700102201 19.084950048740012 30.29413741582521 70-74 31.14505789358445 19.41590753666872 19.051299132445003 30.387735437301828 75-79 31.171525 19.239375 19.043485 30.545614999999998 80-84 30.81364734379834 19.220926381840236 19.21547118845363 30.749955085907793 85-89 30.9825289837423 19.31324247317932 19.165359245364925 30.53886929771346 90-94 30.908068179214975 19.114039737630044 19.13834844257729 30.839543640577695 95-99 30.844253363261547 19.200225446639404 19.230076325747795 30.725444864351253 100-101 31.51635 19.4315125 18.863312500000003 30.188825 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.20593417809635 2 54.36427499999999 3 56.4735 4 59.22425 5 60.756325 6 62.121875 7 61.751900000000006 8 60.917675 9 61.770849999999996 10-14 61.38774034693508 15-19 61.57281 20-24 61.53193833237898 25-29 61.85067616167278 30-34 62.34097861214156 35-39 61.828998634516616 40-44 66.3833250491397 45-49 61.613589999999995 50-54 61.48120877745053 55-59 61.25923950369581 60-64 61.674789494892266 65-69 61.35808295023798 70-74 61.53279333088628 75-79 61.71714 80-84 61.56360242970613 85-89 61.52139828145575 90-94 61.74761181979267 95-99 61.569698227612804 100-101 61.705175000000004 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2.0 1 4.0 2 8.5 3 10.0 4 9.5 5 14.0 6 13.0 7 12.5 8 15.5 9 21.0 10 34.0 11 43.0 12 59.5 13 84.5 14 107.5 15 143.5 16 202.0 17 261.5 18 345.0 19 456.5 20 572.5 21 750.0 22 997.0 23 1253.5 24 1614.0 25 2116.0 26 2664.5 27 3271.0 28 4170.5 29 5203.5 30 6310.0 31 7663.0 32 9047.5 33 10570.5 34 12214.0 35 13677.0 36 15064.5 37 16566.0 38 18200.5 39 19651.5 40 20791.5 41 22044.5 42 23266.0 43 24527.5 44 25941.0 45 27528.0 46 29521.0 47 32074.0 48 35463.5 49 39808.0 50 44985.5 51 51089.0 52 58425.5 53 66831.5 54 75910.5 55 85853.5 56 96489.0 57 107950.0 58 120219.0 59 132354.0 60 145212.5 61 158574.5 62 170869.5 63 182105.0 64 192121.0 65 199267.5 66 202772.5 67 202357.5 68 196891.0 69 187225.0 70 173203.5 71 155104.5 72 134768.0 73 113296.5 74 91472.5 75 70643.0 76 52089.5 77 36254.5 78 24124.5 79 15285.5 80 9028.5 81 5084.0 82 2863.5 83 1666.0 84 1016.5 85 677.5 86 458.0 87 316.0 88 246.5 89 182.5 90 116.5 91 81.0 92 57.5 93 29.5 94 15.0 95 10.5 96 9.0 97 6.0 98 0.5 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.017325 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 2.4999999999999998E-5 15-19 0.0 20-24 0.00198 25-29 0.003575 30-34 1.94951 35-39 0.013430000000000001 40-44 1.6299350000000001 45-49 0.0 50-54 1.1999999999999999E-4 55-59 3.9999999999999996E-5 60-64 0.025585 65-69 0.02054 70-74 0.002305 75-79 0.0 80-84 0.003545 85-89 0.025849999999999998 90-94 0.035809999999999995 95-99 0.002945 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.07397706710918574 #Duplication Level Relative count 1 100.0 2 0.040517422491671416 3 0.0 4 0.0 5 5.002150924897707E-4 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0020008603699590826 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 329095 3.4178705 4.390514 90-94 AAAAA 342175 3.330669 4.0223665 75-79 >>END_MODULE