##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L002_R1_006.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.624243 34.0 31.0 34.0 31.0 34.0 2 32.884479 34.0 31.0 34.0 31.0 34.0 3 32.87259075 34.0 31.0 34.0 31.0 34.0 4 36.3496935 37.0 37.0 37.0 35.0 37.0 5 36.290875 37.0 37.0 37.0 35.0 37.0 6 36.26530175 37.0 37.0 37.0 35.0 37.0 7 36.2680805 37.0 37.0 37.0 35.0 37.0 8 36.18551575 37.0 37.0 37.0 35.0 37.0 9 38.00198475 39.0 38.0 39.0 35.0 39.0 10-14 38.188961899999995 39.4 38.2 39.4 35.2 39.4 15-19 39.3937418 41.0 39.0 41.0 36.0 41.0 20-24 39.1241773 40.6 38.8 41.0 35.8 41.0 25-29 38.24761625 40.0 38.0 41.0 33.4 41.0 30-34 36.38720445 39.0 35.2 41.0 27.6 41.0 35-39 36.92733115 38.6 35.0 40.4 32.0 41.0 40-44 35.99818395 36.8 35.0 40.0 31.4 41.0 45-49 35.4023752 35.0 35.0 39.0 31.6 41.0 50-54 34.40965495 35.0 34.2 36.6 30.2 40.2 55-59 33.26585335 35.0 33.2 35.0 26.8 38.8 60-64 33.313441350000005 35.0 33.2 35.0 28.4 36.8 65-69 33.144974950000005 35.0 33.0 35.0 29.0 35.8 70-74 32.549438099999996 35.0 33.0 35.0 27.4 35.0 75-79 31.808388 34.4 32.2 35.0 25.0 35.0 80-84 32.041245599999996 35.0 32.8 35.0 25.8 35.0 85-89 31.885475550000002 35.0 33.0 35.0 25.6 35.0 90-94 31.69113095 35.0 33.0 35.0 25.0 35.0 95-99 31.329102999999996 35.0 33.0 35.0 24.0 35.0 100-101 30.282829 34.0 31.5 35.0 21.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 24.0 3 13.0 4 49.0 5 109.0 6 355.0 7 1031.0 8 2396.0 9 3694.0 10 4478.0 11 5040.0 12 5509.0 13 5749.0 14 6124.0 15 6430.0 16 6759.0 17 7486.0 18 8259.0 19 8913.0 20 9520.0 21 10726.0 22 12311.0 23 15315.0 24 19502.0 25 25138.0 26 32475.0 27 40919.0 28 51699.0 29 65314.0 30 82643.0 31 107109.0 32 144903.0 33 215056.0 34 375108.0 35 783695.0 36 1216611.0 37 556500.0 38 143452.0 39 19534.0 40 52.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.424272434671046 22.605130282773263 19.42555037875662 27.54504690379907 2 30.440624999999997 22.9568 22.817999999999998 23.784575 3 28.813299999999998 21.77635 21.992925 27.417425 4 30.67405 20.70295 20.218125 28.404875 5 30.8288 19.712699999999998 19.547349999999998 29.91115 6 30.020775 19.2251 18.668725 32.0854 7 31.92725 19.032375000000002 19.264300000000002 29.776075000000002 8 29.783375 19.3024 19.7748 31.139425 9 30.275174999999997 18.3703 19.83075 31.523774999999997 10-14 30.66444 19.29024 19.42258 30.622739999999997 15-19 30.624384999999997 19.20354 19.355015 30.81706 20-24 30.746378046761546 19.191988334588274 19.34133604524922 30.720297573400956 25-29 30.9924527132031 19.214040133525074 19.293003134119097 30.50050401915273 30-34 31.420354913656567 19.0824064195946 18.998717073486958 30.498521593261874 35-39 30.758170859694744 19.216905777084058 19.255574873989108 30.76934848923209 40-44 30.957924005449627 19.207963983579916 19.186817327796764 30.647294683173694 45-49 30.863505000000004 19.17933 19.186575 30.77059 50-54 30.8342685005611 19.21835653101392 19.22494153496492 30.72243343346006 55-59 30.948569999999997 19.315725 19.173935 30.56177 60-64 30.899511913924677 19.192051729683282 19.150802835787697 30.757633520604344 65-69 30.71848241983971 19.233184390169754 19.252705678574785 30.795627511415752 70-74 30.948579999999996 19.324135000000002 19.16856 30.558725 75-79 30.83915 19.258975 19.15751 30.744365000000002 80-84 30.72813460922019 19.236147885422184 19.266502889975435 30.76921461538219 85-89 30.890544290653168 19.318893272821757 19.205162808072927 30.585399628452148 90-94 30.852435014281255 19.184698253446303 19.157300842474136 30.805565889798302 95-99 30.78234 19.217409999999997 19.24626 30.753989999999998 100-101 30.98205 19.2383125 19.1796 30.6000375 >>END_MODULE >>Per base GC content warn #Base %GC 1 57.969319338470115 2 54.225199999999994 3 56.23072500000001 4 59.078925000000005 5 60.73995 6 62.10617499999999 7 61.703325 8 60.9228 9 61.79895 10-14 61.28718 15-19 61.441444999999995 20-24 61.466675620162505 25-29 61.49295673235583 30-34 61.918876506918444 35-39 61.52751934892684 40-44 61.60521868862332 45-49 61.634095 50-54 61.55670193402116 55-59 61.51034 60-64 61.65714543452901 65-69 61.51410993125547 70-74 61.507305 75-79 61.583515 80-84 61.49734922460238 85-89 61.47594391910531 90-94 61.65800090407956 95-99 61.53632999999999 100-101 61.58208750000001 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 15.0 1 14.0 2 15.0 3 13.0 4 15.0 5 16.0 6 18.5 7 29.0 8 33.5 9 38.5 10 52.5 11 71.0 12 90.0 13 118.5 14 150.0 15 206.5 16 267.5 17 345.5 18 474.0 19 620.0 20 824.5 21 1050.0 22 1313.5 23 1737.0 24 2190.5 25 2763.5 26 3493.5 27 4325.0 28 5207.0 29 6305.0 30 7648.0 31 8953.0 32 10370.5 33 11907.0 34 13358.0 35 14816.0 36 16337.0 37 17699.5 38 19009.0 39 20261.5 40 21246.0 41 22281.5 42 23322.0 43 24472.5 44 26004.5 45 27537.5 46 29532.0 47 32407.0 48 36013.5 49 40365.5 50 45916.0 51 52479.5 52 59641.5 53 67751.0 54 77156.0 55 87171.5 56 97216.0 57 107807.0 58 119180.0 59 131146.0 60 143621.0 61 155978.5 62 167845.0 63 179199.5 64 189073.0 65 196036.0 66 199645.0 67 199127.5 68 194565.0 69 185937.0 70 172555.0 71 155483.5 72 135515.5 73 113769.0 74 92172.5 75 71667.5 76 52813.5 77 36803.5 78 24083.5 79 14786.0 80 8422.5 81 4420.5 82 2291.5 83 1210.0 84 682.5 85 441.0 86 304.0 87 207.0 88 151.5 89 124.5 90 91.0 91 59.0 92 39.5 93 27.0 94 16.5 95 10.0 96 8.0 97 3.5 98 1.5 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.034749999999999996 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.001815 25-29 0.0038000000000000004 30-34 0.04104 35-39 0.023525 40-44 0.00783 45-49 0.0 50-54 5.9999999999999995E-5 55-59 0.0 60-64 0.00944 65-69 0.006600000000000001 70-74 0.0 75-79 0.0 80-84 1.4999999999999999E-5 85-89 0.004805 90-94 0.0088 95-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.21545044639733388 #Duplication Level Relative count 1 100.0 2 0.18435488315006388 3 0.002504821781930216 4 0.003005786138316259 5 0.0 6 0.0 7 0.0 8 5.009643563860431E-4 9 0.0 10++ 0.002504821781930216 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 387640 3.691338 4.2743163 70-74 TTTTT 376960 3.6167507 4.23346 90-94 >>END_MODULE