##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L002_R1_005.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.763748 34.0 31.0 34.0 31.0 34.0 2 33.01093825 34.0 31.0 34.0 31.0 34.0 3 33.0269115 34.0 31.0 34.0 31.0 34.0 4 36.43508525 37.0 37.0 37.0 35.0 37.0 5 36.3724045 37.0 37.0 37.0 35.0 37.0 6 36.342738 37.0 37.0 37.0 35.0 37.0 7 36.346063 37.0 37.0 37.0 35.0 37.0 8 36.32691325 37.0 37.0 37.0 35.0 37.0 9 38.1281605 39.0 39.0 39.0 37.0 39.0 10-14 38.3911619 39.4 38.6 39.4 37.0 39.4 15-19 39.5063047 41.0 39.8 41.0 37.0 41.0 20-24 39.26773635 40.8 39.0 41.0 36.0 41.0 25-29 38.6330047 40.0 38.4 41.0 34.4 41.0 30-34 37.799766899999995 40.0 36.8 41.0 33.0 41.0 35-39 36.905866200000006 38.6 35.0 40.6 31.8 41.0 40-44 35.91575855 36.8 35.0 40.0 31.2 41.0 45-49 35.357201499999995 35.0 35.0 39.2 31.2 41.0 50-54 34.52052905000001 35.0 34.8 36.6 30.8 40.4 55-59 33.644842749999995 35.0 34.0 35.0 29.0 38.8 60-64 33.508869149999995 35.0 34.0 35.0 30.0 37.0 65-69 32.8902967 35.0 33.0 35.0 27.6 35.8 70-74 32.67111765 35.0 33.0 35.0 27.4 35.0 75-79 32.10662000000001 34.4 32.6 35.0 26.4 35.0 80-84 32.383354749999995 35.0 33.0 35.0 27.0 35.0 85-89 32.04752599999999 35.0 33.0 35.0 27.0 35.0 90-94 31.634482350000003 35.0 33.0 35.0 25.6 35.0 95-99 31.0073379 35.0 32.6 35.0 23.0 35.0 100-101 29.403816875 34.0 30.5 35.0 9.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 31.0 3 10.0 4 36.0 5 105.0 6 339.0 7 907.0 8 2319.0 9 3565.0 10 4595.0 11 5242.0 12 5660.0 13 5844.0 14 6094.0 15 6550.0 16 7382.0 17 7730.0 18 8436.0 19 9072.0 20 9851.0 21 11002.0 22 12997.0 23 15571.0 24 19530.0 25 24627.0 26 30669.0 27 38914.0 28 48797.0 29 60503.0 30 77077.0 31 98948.0 32 133631.0 33 190209.0 34 314946.0 35 709448.0 36 1299869.0 37 635696.0 38 169062.0 39 24660.0 40 76.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.45570774931223 22.576792722038878 19.373455606227534 27.594043922421356 2 30.446050000000003 22.954749999999997 22.772524999999998 23.826675 3 28.726875000000003 21.7695 21.982 27.521625 4 30.672300000000003 20.688375 20.211399999999998 28.427925 5 30.793975 19.766624999999998 19.5074 29.932 6 29.96705 19.251974999999998 18.657575 32.123400000000004 7 31.903274999999997 19.069924999999998 19.2166 29.8102 8 29.692675 19.30135 19.791175 31.214799999999997 9 30.27355 18.432775 19.763925 31.52975 10-14 30.558047781266893 19.29368701116182 19.446712225397114 30.701552982174174 15-19 30.63836 19.188525000000002 19.3481 30.825015 20-24 30.636604078246517 19.202742771108223 19.37263345916551 30.78801969147975 25-29 30.92320622766077 19.237521970153843 19.245327246850902 30.593944555334485 30-34 31.011844199603626 19.152062755549686 19.160061266896168 30.67603177795052 35-39 30.810955893380843 19.229449548308718 19.235825801561298 30.723768756749138 40-44 30.95800550984959 19.222701896356487 19.171320501351612 30.64797209244231 45-49 30.883325 19.160235 19.168995 30.787445 50-54 30.856135000000002 19.230315 19.213820000000002 30.69973 55-59 30.94096 19.27783 19.166775 30.614435 60-64 30.822250619882702 19.130531532696075 19.17883200272431 30.86838584469691 65-69 30.83514245461162 19.261758504886902 19.246621792924778 30.656477247576703 70-74 30.86915 19.271235 19.1551 30.704515 75-79 30.85504 19.16019 19.174715 30.810055 80-84 30.768043827103426 19.21021332392385 19.244893880546783 30.77684896842594 85-89 30.84898502850605 19.233552675496192 19.182299443979943 30.735162852017822 90-94 30.878223249316655 19.13921198539991 19.156699728352393 30.825865036931045 95-99 30.824800084162458 19.181045086516527 19.221656272363152 30.77249855695786 100-101 31.24268671600752 19.273644727616773 19.007644627866735 30.476023928508972 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.04975167173359 2 54.272725 3 56.2485 4 59.100224999999995 5 60.725975 6 62.09045 7 61.713474999999995 8 60.907475 9 61.80330000000001 10-14 61.25960076344107 15-19 61.463375 20-24 61.424623769726274 25-29 61.51715078299526 30-34 61.68787597755414 35-39 61.53472465012998 40-44 61.60597760229191 45-49 61.67077 50-54 61.555865 55-59 61.555395000000004 60-64 61.69063646457962 65-69 61.491619702188316 70-74 61.573665 75-79 61.665095 80-84 61.54489279552937 85-89 61.584147880523865 90-94 61.704088286247696 95-99 61.597298641120325 100-101 61.71871064451649 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 22.0 1 18.0 2 13.5 3 12.5 4 16.5 5 20.0 6 18.5 7 22.0 8 33.0 9 42.5 10 52.5 11 77.5 12 103.5 13 114.5 14 155.0 15 207.5 16 276.0 17 377.5 18 492.5 19 616.0 20 813.5 21 1033.0 22 1261.5 23 1628.5 24 2170.5 25 2781.5 26 3465.0 27 4315.0 28 5297.5 29 6416.0 30 7618.5 31 8935.5 32 10493.0 33 11997.0 34 13446.5 35 15068.5 36 16462.5 37 17790.5 38 19052.0 39 20237.0 40 21369.5 41 22467.5 42 23546.5 43 24442.5 44 25664.0 45 27575.5 46 29936.5 47 32587.5 48 36019.0 49 40637.0 50 46216.5 51 52538.5 52 59723.0 53 67899.5 54 76832.0 55 86349.0 56 96472.5 57 107726.5 58 119473.5 59 131168.5 60 143429.0 61 155798.0 62 167652.0 63 178526.0 64 187631.5 65 194549.0 66 198478.5 67 198568.0 68 194175.5 69 185148.0 70 171660.0 71 154497.5 72 135242.0 73 114661.0 74 93124.5 75 72121.0 76 53516.0 77 37808.5 78 25089.5 79 15492.5 80 9012.5 81 5023.0 82 2727.0 83 1483.0 84 891.0 85 608.5 86 434.0 87 315.0 88 222.0 89 153.5 90 114.0 91 81.5 92 56.0 93 41.5 94 26.5 95 13.0 96 9.5 97 8.0 98 3.0 99 1.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.02145 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 1.4E-4 15-19 0.0 20-24 4.0500000000000003E-4 25-29 0.003545 30-34 0.0439 35-39 0.019655000000000002 40-44 0.002715 45-49 0.0 50-54 0.0 55-59 0.0 60-64 0.011325 65-69 0.01131 70-74 0.0 75-79 0.0 80-84 0.001605 85-89 0.006305 90-94 0.015684999999999998 95-99 0.0029200000000000003 100-101 3.7500000000000003E-5 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.2759213624117081 #Duplication Level Relative count 1 100.0 2 0.23658554923435504 3 0.0055136462745294604 4 0.0020049622816470766 5 5.012405704117692E-4 6 0.0010024811408235383 7 0.0 8 0.0010024811408235383 9 0.0 10++ 0.0015037217112353074 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 372340 3.5803585 4.139791 70-74 TTTTT 363585 3.4986541 3.9478962 95-97 >>END_MODULE