##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L002_R1_003.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.8835865 34.0 31.0 34.0 31.0 34.0 2 33.1095775 34.0 33.0 34.0 31.0 34.0 3 33.13835875 34.0 33.0 34.0 31.0 34.0 4 36.50249075 37.0 37.0 37.0 35.0 37.0 5 36.44450925 37.0 37.0 37.0 35.0 37.0 6 36.41527275 37.0 37.0 37.0 35.0 37.0 7 36.40603425 37.0 37.0 37.0 35.0 37.0 8 36.3918845 37.0 37.0 37.0 35.0 37.0 9 38.18691025 39.0 39.0 39.0 37.0 39.0 10-14 38.46545655 39.4 39.2 39.4 37.0 39.4 15-19 39.62613975 41.0 40.0 41.0 37.0 41.0 20-24 39.4141404 41.0 39.4 41.0 36.4 41.0 25-29 38.970391850000006 40.2 38.4 41.0 35.2 41.0 30-34 38.23454155 40.0 37.4 41.0 34.2 41.0 35-39 37.22439125 38.6 35.2 40.6 32.8 41.0 40-44 36.380449350000006 37.0 35.0 40.0 32.6 41.0 45-49 35.74096175 35.2 35.0 39.2 32.8 41.0 50-54 34.89221645 35.0 35.0 37.0 31.6 40.4 55-59 34.24724525 35.0 34.2 35.2 31.0 39.2 60-64 33.77266895 35.0 34.0 35.0 30.6 37.0 65-69 33.3837911 35.0 33.4 35.0 30.0 35.8 70-74 33.0866393 35.0 33.0 35.0 29.0 35.0 75-79 32.3503179 34.4 32.6 35.0 27.8 35.0 80-84 32.662029000000004 35.0 33.0 35.0 29.0 35.0 85-89 32.350115349999996 35.0 33.0 35.0 27.4 35.0 90-94 31.946543000000002 35.0 33.0 35.0 27.0 35.0 95-99 31.421168400000006 35.0 33.0 35.0 24.6 35.0 100-101 30.0331585 34.0 30.5 35.0 21.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 27.0 3 7.0 4 29.0 5 92.0 6 256.0 7 717.0 8 1656.0 9 2586.0 10 3336.0 11 3754.0 12 4005.0 13 4227.0 14 4622.0 15 5066.0 16 5754.0 17 6316.0 18 6747.0 19 7232.0 20 8040.0 21 9093.0 22 11062.0 23 13226.0 24 16565.0 25 21009.0 26 27131.0 27 33677.0 28 42195.0 29 52725.0 30 66075.0 31 85099.0 32 113299.0 33 161538.0 34 271086.0 35 690348.0 36 1419901.0 37 693808.0 38 182459.0 39 25158.0 40 77.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.444611831174146 22.546342283188338 19.319863036308583 27.689182849328937 2 30.506375000000002 22.888749999999998 22.7605 23.844375 3 28.731525 21.6877 21.94105 27.639725 4 30.704749999999997 20.591275 20.1359 28.568074999999997 5 30.857025 19.718275 19.492325 29.932375 6 30.048825 19.210325 18.6199 32.12095 7 31.95575 18.986025 19.194425000000003 29.8638 8 29.7643 19.2461 19.748874999999998 31.240725 9 30.335800000000003 18.414475 19.74755 31.502174999999998 10-14 30.58010376104669 19.2604786672154 19.42064873929193 30.738768832445974 15-19 30.643625000000004 19.17166 19.3308 30.853914999999997 20-24 30.641964182678223 19.179740211116716 19.33715074631254 30.841144859892523 25-29 30.74682998028114 19.223106977080935 19.26528773844368 30.76477530419424 30-34 30.76488746462746 19.139942625346496 19.211742254094027 30.883427655932017 35-39 30.72037404305174 19.187349941765817 19.266985920724995 30.825290094457454 40-44 30.81534488602718 19.19292280040915 19.18999273433616 30.80173957922751 45-49 30.812825 19.088015 19.19342 30.905739999999998 50-54 30.734086285421252 19.172018038529878 19.25110860798198 30.84278706806689 55-59 30.819715 19.191 19.20828 30.781005 60-64 30.826479800477802 19.115432914061323 19.17348019106041 30.88460709440047 65-69 30.738586893162584 19.190296793016593 19.26038533494036 30.810730978880464 70-74 30.838355 19.21367 19.17363 30.774344999999997 75-79 30.83028 19.149 19.154905 30.865815 80-84 30.759518489236655 19.20040095061258 19.249889729080817 30.790190831069953 85-89 30.83244550675231 19.229416038911634 19.197898882941374 30.740239571394685 90-94 30.854612638110957 19.139010297633344 19.15338995232757 30.852987111928133 95-99 30.81702890542695 19.189171700992357 19.200017761737097 30.793781631843594 100-101 31.063232496490915 19.18127518999174 19.07697457722564 30.6785177362917 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.13379468050308 2 54.350750000000005 3 56.371249999999996 4 59.272825 5 60.78940000000001 6 62.169775 7 61.81955 8 61.005025 9 61.837975 10-14 61.31887259349267 15-19 61.497539999999994 20-24 61.483109042570746 25-29 61.511605284475394 30-34 61.64831512055948 35-39 61.54566413750919 40-44 61.61708446525469 45-49 61.718565000000005 50-54 61.576873353488146 55-59 61.600719999999995 60-64 61.711086894878264 65-69 61.549317872043055 70-74 61.6127 75-79 61.69609499999999 80-84 61.5497093203066 85-89 61.572685078146996 90-94 61.70759975003909 95-99 61.610810537270545 100-101 61.74175023278262 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 22.0 1 17.5 2 12.5 3 11.0 4 14.0 5 20.5 6 21.0 7 24.0 8 34.0 9 40.0 10 54.5 11 71.0 12 91.5 13 123.5 14 167.0 15 212.5 16 265.5 17 356.0 18 453.0 19 585.5 20 802.5 21 1014.0 22 1256.5 23 1664.0 24 2187.5 25 2764.5 26 3434.0 27 4225.5 28 5204.5 29 6335.0 30 7625.0 31 9038.5 32 10521.5 33 12086.0 34 13450.5 35 14770.5 36 16061.5 37 17330.5 38 18708.5 39 19823.5 40 20942.5 41 22112.0 42 23068.5 43 24191.0 44 25722.5 45 27537.5 46 29576.0 47 32429.0 48 36199.5 49 40587.5 50 45972.5 51 52409.0 52 59742.0 53 68059.5 54 76844.5 55 86499.0 56 96949.5 57 107435.0 58 118581.0 59 130744.0 60 143022.0 61 155460.5 62 167880.0 63 178683.5 64 187846.0 65 195033.5 66 199514.0 67 199478.5 68 194768.0 69 185905.5 70 172734.5 71 155588.0 72 135635.0 73 114926.0 74 93504.5 75 72821.0 76 53946.0 77 37711.5 78 24987.5 79 15343.0 80 8724.5 81 4605.0 82 2331.5 83 1200.0 84 635.0 85 386.0 86 271.5 87 180.5 88 109.5 89 89.5 90 67.5 91 38.0 92 27.5 93 22.0 94 16.0 95 8.5 96 3.0 97 2.5 98 2.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0319 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 4.4999999999999996E-5 15-19 0.0 20-24 3.4E-4 25-29 0.0018050000000000002 30-34 0.076085 35-39 0.020065 40-44 0.002255 45-49 0.0 50-54 7.199999999999999E-4 55-59 0.0 60-64 0.02115 65-69 0.026455 70-74 0.0 75-79 0.0 80-84 0.007635 85-89 0.022705 90-94 0.03237 95-99 0.00978 100-101 5.874999999999999E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.27193745438548506 #Duplication Level Relative count 1 100.0 2 0.2390953474150635 3 0.004009984862307144 4 0.0015037443233651793 5 0.0 6 0.0 7 0.002004992431153572 8 0.001002496215576786 9 5.01248107788393E-4 10++ 0.0015037443233651793 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 358535 3.465635 3.9867706 65-69 TTTTT 354025 3.3982143 3.8247964 10-14 >>END_MODULE