##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L002_R1_002.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.791193 34.0 31.0 34.0 31.0 34.0 2 33.04686675 34.0 31.0 34.0 31.0 34.0 3 33.085872 34.0 33.0 34.0 31.0 34.0 4 36.45147925 37.0 37.0 37.0 35.0 37.0 5 36.38426125 37.0 37.0 37.0 35.0 37.0 6 36.35032475 37.0 37.0 37.0 35.0 37.0 7 36.34909875 37.0 37.0 37.0 35.0 37.0 8 36.32880125 37.0 37.0 37.0 35.0 37.0 9 38.121445 39.0 39.0 39.0 37.0 39.0 10-14 38.39169735 39.4 38.8 39.4 37.0 39.4 15-19 39.53446945 41.0 40.0 41.0 37.0 41.0 20-24 39.312677349999994 40.8 39.0 41.0 36.0 41.0 25-29 38.857321999999996 40.0 38.4 41.0 35.0 41.0 30-34 38.12137695 40.0 37.2 41.0 33.6 41.0 35-39 37.12450255 38.6 35.2 40.6 32.6 41.0 40-44 36.26684265 37.0 35.0 40.0 32.0 41.0 45-49 35.5839845 35.2 35.0 39.2 32.0 41.0 50-54 34.710315300000005 35.0 35.0 37.0 31.0 40.4 55-59 34.054998950000005 35.0 34.0 35.2 30.6 39.2 60-64 33.5598635 35.0 33.8 35.0 29.8 37.0 65-69 33.1154137 35.0 33.0 35.0 29.0 35.8 70-74 32.79821415 35.0 33.0 35.0 29.0 35.0 75-79 32.0908127 34.4 32.4 35.0 26.4 35.0 80-84 32.35195085 35.0 33.0 35.0 27.0 35.0 85-89 31.9819028 35.0 33.0 35.0 27.0 35.0 90-94 31.516499950000004 35.0 33.0 35.0 24.4 35.0 95-99 30.9265171 35.0 32.4 35.0 23.0 35.0 100-101 29.636937250000003 34.0 30.5 35.0 11.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 19.0 3 8.0 4 40.0 5 99.0 6 317.0 7 862.0 8 2027.0 9 3400.0 10 4168.0 11 4912.0 12 5000.0 13 5280.0 14 5822.0 15 6260.0 16 6903.0 17 7691.0 18 8445.0 19 9251.0 20 9909.0 21 10928.0 22 12770.0 23 15392.0 24 19271.0 25 24376.0 26 30295.0 27 37850.0 28 46827.0 29 58755.0 30 73862.0 31 93924.0 32 124508.0 33 174405.0 34 284729.0 35 674270.0 36 1346532.0 37 679433.0 38 183803.0 39 27581.0 40 76.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.471073731213842 22.505202782219364 19.37388060783901 27.64984287872779 2 30.4733 22.943475 22.75615 23.827075 3 28.69705 21.712525 21.989349999999998 27.601075 4 30.660125 20.628674999999998 20.174025 28.537174999999998 5 30.829050000000002 19.751875 19.513975 29.9051 6 30.023325 19.23435 18.658575 32.08375 7 31.916099999999997 19.048675 19.221525 29.813699999999997 8 29.720975 19.287275 19.777900000000002 31.213849999999997 9 30.265375 18.43815 19.78595 31.510525 10-14 30.569958367900085 19.274951259883025 19.452571686172046 30.702518686044844 15-19 30.631520000000002 19.19204 19.350424999999998 30.826015 20-24 30.602206564894313 19.1967245778909 19.374205775888985 30.8268630813258 25-29 30.737711086078832 19.238671363143432 19.289301471998165 30.734316078779568 30-34 30.76563487125754 19.135593769805052 19.23096819044947 30.86780316848794 35-39 30.71661575449222 19.192675447727016 19.276490886939968 30.814217910840796 40-44 30.800130980897215 19.199131514050872 19.21356161289705 30.78717589215486 45-49 30.816605000000003 19.117985 19.189165 30.876245 50-54 30.74311084105946 19.18574225931832 19.243848810763247 30.827298088858974 55-59 30.812679999999997 19.203015 19.20124 30.783064999999997 60-64 30.8023440931132 19.12910765651 19.199446252960698 30.8691019974161 65-69 30.741096783350436 19.200630180971483 19.238768712561 30.81950432311708 70-74 30.836859999999998 19.229495 19.18814 30.745505 75-79 30.849385 19.152340000000002 19.15497 30.843304999999997 80-84 30.776185424929466 19.198083002871474 19.21712416628656 30.808607405912504 85-89 30.851779182118435 19.22944666504435 19.172260508025115 30.7465136448121 90-94 30.898654347880992 19.126040072730383 19.12614010076324 30.849165478625384 95-99 30.855666495621243 19.155009259154625 19.186301471514035 30.803022773710104 100-101 31.14642048522035 19.144437473570157 19.04211187240725 30.66703016880224 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.12091660994163 2 54.300375 3 56.298125 4 59.1973 5 60.73415 6 62.107075 7 61.729800000000004 8 60.934825000000004 9 61.77589999999999 10-14 61.27247705394493 15-19 61.45753499999999 20-24 61.429069646220114 25-29 61.4720271648584 30-34 61.63343803974548 35-39 61.53083366533302 40-44 61.587306873052086 45-49 61.69285 50-54 61.57040892991843 55-59 61.595745 60-64 61.6714460905293 65-69 61.560601106467516 70-74 61.582364999999996 75-79 61.69268999999999 80-84 61.58479283084196 85-89 61.59829282693053 90-94 61.74781982650638 95-99 61.65868926933135 100-101 61.813450654022596 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 23.0 1 15.0 2 11.0 3 12.5 4 10.5 5 18.0 6 25.0 7 24.5 8 33.0 9 49.0 10 51.5 11 74.0 12 98.0 13 117.5 14 156.0 15 194.0 16 256.0 17 349.5 18 466.0 19 615.5 20 781.0 21 1011.5 22 1320.0 23 1723.5 24 2236.0 25 2819.5 26 3565.0 27 4367.5 28 5298.5 29 6498.0 30 7777.0 31 9074.5 32 10506.0 33 12109.0 34 13551.0 35 14943.0 36 16336.0 37 17648.0 38 19055.5 39 20230.5 40 21234.0 41 22252.5 42 23112.5 43 24270.0 44 25758.0 45 27471.5 46 29714.0 47 32551.0 48 36185.5 49 40657.0 50 45951.0 51 52310.5 52 59772.5 53 67951.0 54 76829.0 55 86288.5 56 96900.0 57 107889.0 58 118910.5 59 130755.5 60 142820.5 61 155213.5 62 167511.5 63 178285.0 64 187315.5 65 194593.0 66 198452.5 67 198742.5 68 194546.0 69 185456.5 70 171993.5 71 154862.5 72 135538.0 73 114493.0 74 93059.5 75 72486.0 76 53749.5 77 37863.0 78 25210.5 79 15817.0 80 9367.5 81 5193.5 82 2767.5 83 1480.0 84 886.0 85 601.0 86 440.0 87 321.0 88 223.5 89 158.0 90 111.5 91 84.0 92 55.5 93 36.5 94 27.0 95 18.0 96 11.0 97 4.0 98 1.5 99 1.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.02945 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 2.3999999999999998E-4 15-19 0.0 20-24 6.749999999999999E-4 25-29 2.1500000000000002E-4 30-34 0.05706 35-39 0.012454999999999999 40-44 6.85E-4 45-49 0.0 50-54 0.0026699999999999996 55-59 0.0 60-64 0.01933 65-69 0.022369999999999998 70-74 0.0 75-79 0.0 80-84 0.006109999999999999 85-89 0.01951 90-94 0.028025 95-99 0.00707 100-101 5.874999999999999E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.2854229358073324 #Duplication Level Relative count 1 100.0 2 0.24463237468856996 3 0.006516846047031576 4 0.0030077750986299587 5 0.0 6 0.0010025916995433195 7 0.0015038875493149793 8 0.0 9 5.012958497716597E-4 10++ 0.002005183399086639 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 360380 3.4770741 4.004719 70-74 TTTTT 357475 3.4219608 3.8293917 10-14 >>END_MODULE