##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L002_R1_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.739912 34.0 31.0 34.0 31.0 34.0 2 32.99394575 34.0 31.0 34.0 31.0 34.0 3 33.01695025 34.0 31.0 34.0 31.0 34.0 4 36.41829425 37.0 37.0 37.0 35.0 37.0 5 36.3552145 37.0 37.0 37.0 35.0 37.0 6 36.31781375 37.0 37.0 37.0 35.0 37.0 7 36.302806 37.0 37.0 37.0 35.0 37.0 8 36.30058125 37.0 37.0 37.0 35.0 37.0 9 38.0870495 39.0 39.0 39.0 37.0 39.0 10-14 38.34789429999999 39.4 38.4 39.4 35.8 39.4 15-19 39.48951935 41.0 39.6 41.0 37.0 41.0 20-24 39.270885199999995 40.8 39.0 41.0 36.0 41.0 25-29 38.8319896 40.0 38.2 41.0 35.0 41.0 30-34 38.0857611 40.0 37.0 41.0 33.4 41.0 35-39 37.09165615 38.6 35.2 40.6 32.6 41.0 40-44 36.24455895 37.0 35.0 40.0 31.8 41.0 45-49 35.53774550000001 35.2 35.0 39.2 31.8 41.0 50-54 34.68663110000001 35.0 34.8 37.0 31.0 40.4 55-59 34.0421536 35.0 34.0 35.2 30.4 39.2 60-64 33.52385705 35.0 33.8 35.0 29.8 37.2 65-69 33.11584105000001 35.0 33.0 35.0 29.0 35.8 70-74 32.807291799999994 35.0 33.0 35.0 29.0 35.0 75-79 32.05186975 34.4 32.4 35.0 26.4 35.0 80-84 32.3236213 35.0 33.0 35.0 27.0 35.0 85-89 31.96220115 35.0 33.0 35.0 27.0 35.0 90-94 31.5512451 35.0 33.0 35.0 24.4 35.0 95-99 30.9818809 35.0 32.6 35.0 23.0 35.0 100-101 29.813287125 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 25.0 3 8.0 4 25.0 5 103.0 6 302.0 7 907.0 8 2138.0 9 3349.0 10 4387.0 11 4828.0 12 5343.0 13 5519.0 14 5782.0 15 6489.0 16 7187.0 17 7971.0 18 8585.0 19 9397.0 20 10123.0 21 11111.0 22 13250.0 23 16085.0 24 19888.0 25 24898.0 26 30913.0 27 38505.0 28 48305.0 29 60021.0 30 75508.0 31 95963.0 32 126029.0 33 175410.0 34 280843.0 35 653264.0 36 1332331.0 37 694307.0 38 190318.0 39 30481.0 40 102.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.423360227641105 22.576985956528873 19.379760032337202 27.619893783492817 2 30.491049999999998 22.980525 22.733999999999998 23.794425 3 28.675625 21.7895 21.9883 27.546575 4 30.621175 20.720325 20.1736 28.484900000000003 5 30.843700000000002 19.7289 19.499575 29.927825000000002 6 30.021900000000002 19.276175000000002 18.65475 32.047175 7 31.864900000000002 19.092824999999998 19.233225 29.80905 8 29.714475 19.323999999999998 19.753775 31.20775 9 30.241975 18.451999999999998 19.772775 31.533250000000002 10-14 30.547204840651858 19.29519727323332 19.4751477141119 30.682450172002923 15-19 30.614795 19.216075 19.35674 30.81239 20-24 30.590915022777693 19.212823308998125 19.366199612696708 30.830062055527474 25-29 30.71045 19.27205 19.303645 30.713855000000002 30-34 30.74107420704937 19.171850741458318 19.237414604181623 30.84966044731069 35-39 30.691768953595687 19.21671708384973 19.30839105333261 30.783122909221973 40-44 30.78751 19.218355000000003 19.225365 30.76877 45-49 30.779915000000003 19.134225 19.211795000000002 30.874065 50-54 30.71145722723068 19.203494588131434 19.272020139762127 30.81302804487576 55-59 30.797970000000003 19.217115 19.231465 30.753449999999997 60-64 30.821780560637045 19.141831224593822 19.18357778089049 30.85281043387864 65-69 30.74227014573974 19.227456903615494 19.251021146357402 30.779251804287362 70-74 30.820265000000003 19.253135 19.203025 30.723574999999997 75-79 30.815985 19.179295 19.18537 30.81935 80-84 30.756049331701117 19.22022946563391 19.240875512388477 30.782845690276496 85-89 30.841499678830274 19.223351851745356 19.206539510626854 30.728608958797516 90-94 30.890935647918326 19.15060889486315 19.134555207331125 30.823900249887398 95-99 30.820496039552275 19.205946282083566 19.19922069157672 30.774336986787436 100-101 31.073315464825786 19.185437058011313 19.07497348099144 30.666273996171462 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.043254011133925 2 54.285475000000005 3 56.2222 4 59.106075000000004 5 60.771525000000004 6 62.069075 7 61.67395 8 60.922225 9 61.775225 10-14 61.22965501265478 15-19 61.427184999999994 20-24 61.420977078305164 25-29 61.424305000000004 30-34 61.590734654360055 35-39 61.47489186281766 40-44 61.556279999999994 45-49 61.65398 50-54 61.524485272106446 55-59 61.55142 60-64 61.67459099451569 65-69 61.5215219500271 70-74 61.54384 75-79 61.635335000000005 80-84 61.538895021977616 85-89 61.57010863762778 90-94 61.71483589780573 95-99 61.594833026339714 100-101 61.739589460997244 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 22.0 1 17.5 2 11.0 3 9.5 4 9.5 5 10.5 6 16.5 7 18.5 8 21.0 9 34.5 10 49.0 11 65.5 12 88.5 13 125.0 14 161.0 15 211.5 16 286.0 17 377.0 18 503.5 19 655.0 20 832.5 21 1058.5 22 1336.0 23 1717.0 24 2189.0 25 2796.0 26 3570.5 27 4532.0 28 5557.0 29 6602.0 30 7823.5 31 9083.0 32 10518.5 33 12167.0 34 13739.5 35 15251.0 36 16614.0 37 17876.0 38 19099.5 39 20231.5 40 21367.0 41 22324.0 42 23458.5 43 24674.0 44 25906.5 45 27526.5 46 29972.0 47 32869.5 48 36250.0 49 40870.5 50 46124.0 51 52595.5 52 59890.5 53 68027.0 54 76868.0 55 86337.5 56 96726.0 57 107271.5 58 118764.0 59 131153.5 60 143565.5 61 155582.5 62 167118.5 63 178189.0 64 187696.0 65 194528.0 66 198387.5 67 198155.5 68 194016.5 69 185160.5 70 171224.5 71 154428.0 72 135224.0 73 114210.0 74 92665.0 75 72111.5 76 53745.0 77 37707.5 78 24940.0 79 15761.5 80 9265.0 81 5046.5 82 2713.0 83 1496.0 84 900.5 85 595.5 86 397.5 87 281.0 88 208.5 89 142.0 90 89.5 91 64.0 92 50.0 93 34.5 94 22.5 95 16.0 96 7.0 97 2.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.053200000000000004 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 2.45E-4 15-19 0.0 20-24 8.5E-4 25-29 0.0 30-34 0.02877 35-39 0.0043300000000000005 40-44 0.0 45-49 0.0 50-54 8.049999999999999E-4 55-59 0.0 60-64 0.015705 65-69 0.018005 70-74 0.0 75-79 0.0 80-84 0.00507 85-89 0.013925 90-94 0.02297 95-99 0.008780000000000001 100-101 9.75E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.31291707697460663 #Duplication Level Relative count 1 100.0 2 0.27679301197932077 3 0.0040114929272365325 4 0.0015043098477136997 5 0.0010028732318091331 6 5.014366159045666E-4 7 0.0 8 5.014366159045666E-4 9 5.014366159045666E-4 10++ 0.002507183079522833 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 362360 3.4780009 3.9374146 65-69 TTTTT 362100 3.4525533 3.7889907 95-97 >>END_MODULE