rRNA Blast searches

Up to the best 10 hits to the rRNA database are shown below.

Entries with semi-colons are from the Silva rRNA database. Entries with double colons in them are from the University of Texas database.

Count Percent of reads Hit
719 0.1% DISTINCT (or unique) QUERIES. This is the overall match rate to the rRNA database.
29 0.0% Bacteria;Acidobacteria;23k22;unculturedAY281352.1317.4184
29 0.0% uncultured_Acidobacteria_bacterium::AY281352::01183
28 0.0% Bacteria;Acidobacteria;23k22;unculturedGT260700.17519.20515
28 0.0% Bacteria;Acidobacteria;23k22;unculturedAY281356.9179.12165
28 0.0% Bacteria;Acidobacteria;23k22;unculturedGT260712.22677.25665
28 0.0% uncultured_Acidobacteria_bacterium::AY281356::01199
26 0.0% Bacteria;Acidobacteria;23k22;unculturedGT260704.8144.11130
24 0.0% Bacteria;Acidobacteria;23k22;unculturedGT260706.10141.13130
24 0.0% Bacteria;Acidobacteria;23k22;unculturedGT260705.14097.17089
23 0.0% Bacteria;Acidobacteria;23k22;unculturedGT260709.24620.27608

The first column is the count of the number of queries -- reads, contigs, etc. -- that match to the rRNA entry in the database. The second column is the percentage of the total queries (608338) of minimum length 50 that were used. These queries represent 2 percent of the total starting queries. The blast evalue was 0.00000001 and up to 5 descriptions were retained for each hit.There were 719 distinct queries. A given query could match to multiple rRNA database entries and thus be counted multiple times. However when summing up the queries for an overall match number any given query is counted once.

245719 lines of Blast output were examined of which 236011 lines had aligments of at least 50 bases.

Link to all hits