##FastQC 0.10.1 >>Basic Statistics pass #Measure Value Filename 002003_Wally_GTTTCG_R2_filtered.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 31794963 Filtered Sequences 0 Sequence length 30-101 %GC 60 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.740821022499695 34.0 31.0 34.0 31.0 34.0 2 32.849616211221885 34.0 31.0 34.0 31.0 34.0 3 32.881444365889024 34.0 31.0 34.0 31.0 34.0 4 36.25186571218844 37.0 37.0 37.0 35.0 37.0 5 36.24796987497674 37.0 37.0 37.0 35.0 37.0 6 36.242501555985456 37.0 37.0 37.0 35.0 37.0 7 36.243427614619335 37.0 37.0 37.0 35.0 37.0 8 36.22981234480443 37.0 37.0 37.0 35.0 37.0 9 37.99323622424093 39.0 39.0 39.0 37.0 39.0 10-14 38.27091981204696 39.4 38.8 39.4 35.4 39.4 15-19 39.42897804913313 41.0 39.8 41.0 36.8 41.0 20-24 39.193817372896454 41.0 39.0 41.0 35.6 41.0 25-29 38.90086737952801 40.2 38.4 41.0 35.0 41.0 30-34 38.323028178668 40.0 37.4 41.0 34.2 41.0 35-39 37.42052804446253 39.0 35.2 40.8 33.0 41.0 40-44 36.58639690698249 37.4 35.0 40.0 32.6 41.0 45-49 35.741322215944145 35.2 35.0 39.4 31.6 41.0 50-54 34.529261937932716 35.0 34.0 37.0 30.0 39.8 55-59 34.73876099229267 35.0 35.0 35.4 31.2 39.6 60-64 34.40656520121303 35.0 35.0 35.0 31.0 38.0 65-69 34.120833759934804 35.0 34.4 35.0 31.0 36.4 70-74 33.89269702396354 35.0 34.0 35.0 31.0 35.4 75-79 33.68534001750202 35.0 34.0 35.0 30.4 35.0 80-84 33.527984621471276 35.0 33.6 35.0 30.0 35.0 85-89 33.40784715252697 35.0 33.0 35.0 30.0 35.0 90-94 33.30481588595512 35.0 33.0 35.0 29.0 35.0 95-99 33.33696722063574 35.0 33.0 35.0 29.4 35.0 100-101 33.03724813857923 34.5 32.0 35.0 28.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 2.0 15 2.0 16 20.0 17 72.0 18 498.0 19 2383.0 20 7843.0 21 18183.0 22 37267.0 23 66745.0 24 107421.0 25 157130.0 26 216271.0 27 284029.0 28 364752.0 29 455258.0 30 569685.0 31 722006.0 32 949123.0 33 1333315.0 34 2169523.0 35 5110056.0 36 1.0789593E7 37 6280951.0 38 1856108.0 39 293873.0 40 2853.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 32.71496809101492 22.58163344929824 17.755164552322327 26.94823390736451 2 30.302581739319628 23.27615500482563 21.425713315739856 24.995549940114888 3 28.886588889817546 21.43974440546441 21.477652134133404 28.196014570584644 4 30.938231170705212 20.512026138465476 19.916354267940978 28.633388422888334 5 30.639171171256198 20.462606991374628 19.632460099679037 29.265761737690145 6 29.627107452244484 19.718599882597623 18.48592212871184 32.16837053644605 7 31.791674958566716 19.246591537463786 19.394157730423707 29.567575773545784 8 29.182540717678336 19.66878030491708 19.981343679845086 31.167335297559497 9 30.081627120487127 18.6956525569563 19.95011717922588 31.27260314333069 10-14 30.25878190004963 19.610985029905027 19.739403378648056 30.390829691397286 15-19 30.255836207858593 19.571123599364842 19.718471405534967 30.454568787241598 20-24 30.157323071115716 19.65423529471857 19.81314696038216 30.37529467378355 25-29 30.234590703296547 19.740459905683224 19.742455253076603 30.282494137943623 30-34 30.24935516090116 19.633334060272016 19.700836108753318 30.416474670073505 35-39 30.182588921980592 19.725188930410724 19.780553060921502 30.311669086687175 40-44 30.26776083418176 19.740795558398382 19.706659726084844 30.28478388133501 45-49 30.263061097359895 19.656335431912687 19.69478440316066 30.38581906756676 50-54 30.14913532084767 19.741694640791206 19.78878728755705 30.320382750804075 55-59 30.233353888173475 19.772342517479384 19.73725741122199 30.25704618312516 60-64 30.237255925664925 19.69684005730113 19.719178287016607 30.346725730017337 65-69 30.119195457151537 19.79157868145395 19.82319814953894 30.266027711855575 70-74 30.20088195443901 19.831817463405148 19.762021959743308 30.205278622412536 75-79 30.194053967039075 19.760388800629165 19.75783970840287 30.287717523928887 80-84 30.065038599030995 19.853744104424788 19.866623501606238 30.214593794937976 85-89 30.135422960268098 19.89982873551403 19.8277844815294 30.13696382268847 90-94 30.090912389316205 19.847735298846274 19.83245359428691 30.228898717550614 95-99 29.911342668615966 19.961802273928033 19.981202761712876 30.145652295743126 100-101 30.283863404729427 19.894942708803022 19.72785683486955 30.093337051598002 >>END_MODULE >>Per base GC content pass #Base %GC 1 59.663201998379435 2 55.29813167943451 3 57.08260346040218 4 59.57161959359355 5 59.90493290894634 6 61.795477988690536 7 61.3592507321125 8 60.34987601523783 9 61.35423026381782 10-14 60.64961159144692 15-19 60.710404995100184 20-24 60.53261774489926 25-29 60.51708484124018 30-34 60.66582983097467 35-39 60.49425800866777 40-44 60.552544715516774 45-49 60.64888016492665 50-54 60.46951807165174 55-59 60.49040007129863 60-64 60.583981655682265 65-69 60.38522316900712 70-74 60.40616057685154 75-79 60.48177149096796 80-84 60.279632393968974 85-89 60.272386782956566 90-94 60.319811106866815 95-99 60.05699496435909 100-101 60.37720045632743 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 711.0 1 521.5 2 321.5 3 305.5 4 314.5 5 347.5 6 395.5 7 454.5 8 533.0 9 648.5 10 801.0 11 1024.5 12 1318.5 13 1629.5 14 1979.5 15 2460.0 16 3119.0 17 3905.0 18 4854.5 19 5981.5 20 7285.5 21 8965.5 22 11008.5 23 13498.5 24 16634.0 25 20804.5 26 25575.0 27 31054.0 28 37843.0 29 46165.5 30 56118.0 31 67202.0 32 80036.0 33 95026.0 34 110528.5 35 126650.0 36 143758.5 37 161018.0 38 178320.5 39 195261.0 40 210899.5 41 225819.0 42 240988.5 43 255900.0 44 271679.0 45 288680.5 46 308219.0 47 332550.0 48 362064.5 49 397405.5 50 438679.0 51 489094.5 52 548083.5 53 613207.0 54 683776.5 55 760330.5 56 843038.5 57 929467.5 58 1020140.5 59 1113197.0 60 1205003.0 61 1298183.0 62 1387902.0 63 1463797.5 64 1521529.5 65 1554377.0 66 1556935.5 67 1529659.5 68 1467925.0 69 1372171.5 70 1250979.0 71 1110421.5 72 957005.0 73 798038.5 74 643758.5 75 502880.0 76 379758.5 77 275237.0 78 190139.0 79 125353.5 80 78973.0 81 47119.0 82 26569.5 83 14446.0 84 8093.5 85 4733.0 86 2833.5 87 1852.5 88 1288.0 89 831.0 90 532.0 91 376.0 92 248.5 93 153.0 94 109.5 95 76.5 96 50.5 97 37.5 98 30.5 99 29.5 100 30.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.01024061578558843 3 0.014505442261404738 4 0.023047675822110567 5 0.024966218705774243 6 0.032259826815964524 7 0.0375468277789787 8 0.046699220879734944 9 0.04050641606345005 10-14 0.015592406885329604 15-19 0.0059349023302842025 20-24 0.002583428073182535 25-29 0.0031470393596620947 30-34 0.011473779788195675 35-39 0.0010179630555474245 40-44 3.159778996209624E-4 45-49 3.7359207788754016E-5 50-54 3.273263492801275E-4 55-59 6.614153212837312E-4 60-64 0.0 65-69 1.116933597308356E-4 70-74 0.0 75-79 6.425742532140183E-6 80-84 0.0 85-89 0.0 90-94 0.0 95-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 30-31 23275.0 32-33 23820.0 34-35 24920.0 36-37 25239.0 38-39 24654.0 40-41 25282.0 42-43 25270.0 44-45 24508.0 46-47 25243.0 48-49 25262.0 50-51 19681.0 52-53 17379.0 54-55 20597.0 56-57 23083.0 58-59 25535.0 60-61 27368.0 62-63 29123.0 64-65 31600.0 66-67 33975.0 68-69 36540.0 70-71 39930.0 72-73 43432.0 74-75 47390.0 76-77 52758.0 78-79 57977.0 80-81 63999.0 82-83 71928.0 84-85 80713.0 86-87 94888.0 88-89 113455.0 90-91 140124.0 92-93 178443.0 94-95 237499.0 96-97 323793.0 98-99 489788.0 100-101 2.9246492E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 3.7808071318635155 #Duplication Level Relative count 1 100.0 2 3.726824201506102 3 0.10594650740067516 4 0.010906258114775382 5 0.006232147494157362 6 0.005193456245131135 7 0.001038691249026227 8 0.0015580368735393405 9 0.0 10++ 0.011425603739288496 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 3176080 3.4615064 3.7855513 95-97 AAAAA 3203110 3.4360929 3.6602595 95-97 >>END_MODULE