FastQCFastQC Report
Thu 4 Oct 2012
002003_Wally_GTTTCG_R1_filtered.fastq

Summary

[OK] Basic Statistics

Measure Value
Filename 002003_Wally_GTTTCG_R1_filtered.fastq
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 31794963
Filtered Sequences 0
Sequence length 30-101
%GC 60

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[FAIL] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[WARN] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 3180655 3.4312499 3.7258663 95-97
AAAAA 3108230 3.3571012 3.6536024 95-97