##FastQC 0.10.1 >>Basic Statistics pass #Measure Value Filename 002003_Wally_GTTTCG_R1_filtered.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 31794963 Filtered Sequences 0 Sequence length 30-101 %GC 60 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.8000162164051 34.0 31.0 34.0 31.0 34.0 2 33.01691227003472 34.0 31.0 34.0 31.0 34.0 3 33.048745991621374 34.0 31.0 34.0 31.0 34.0 4 36.443181110165156 37.0 37.0 37.0 35.0 37.0 5 36.379883662704685 37.0 37.0 37.0 35.0 37.0 6 36.349948103414995 37.0 37.0 37.0 35.0 37.0 7 36.34686503645247 37.0 37.0 37.0 35.0 37.0 8 36.32946680894077 37.0 37.0 37.0 35.0 37.0 9 38.120379004687 39.0 39.0 39.0 37.0 39.0 10-14 38.364884802665124 39.4 38.6 39.4 36.2 39.4 15-19 39.516634593976406 41.0 39.8 41.0 37.0 41.0 20-24 39.2491485333699 40.8 39.0 41.0 35.8 41.0 25-29 37.6187602482821 40.0 37.4 41.0 28.6 41.0 30-34 37.14245391161984 39.6 36.0 41.0 31.2 41.0 35-39 36.99478318016837 38.6 35.0 40.4 32.2 41.0 40-44 35.28068410799144 36.4 34.6 40.0 26.6 41.0 45-49 35.44472593172937 35.0 34.8 39.0 30.8 41.0 50-54 34.81656151045969 35.0 34.6 37.0 30.4 40.6 55-59 34.1419329348099 35.0 34.0 35.2 29.8 39.2 60-64 34.02568226331415 35.0 34.0 35.0 30.2 37.6 65-69 33.73160177929231 35.0 33.4 35.0 29.8 36.2 70-74 33.315272609916505 35.0 33.0 35.0 29.2 35.0 75-79 32.96722349595874 34.6 32.6 35.0 28.8 35.0 80-84 33.28064706790001 35.0 33.0 35.0 29.0 35.0 85-89 33.112454097536954 35.0 33.0 35.0 28.8 35.0 90-94 33.133502992467186 35.0 33.0 35.0 29.0 35.0 95-99 33.21146807250932 35.0 33.0 35.0 29.0 35.0 100-101 32.806331174619466 34.0 32.0 35.0 28.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 3.0 20 67.0 21 949.0 22 6701.0 23 26882.0 24 69948.0 25 138134.0 26 226863.0 27 329243.0 28 441530.0 29 565847.0 30 722982.0 31 948071.0 32 1331563.0 33 2022022.0 34 3225103.0 35 5822931.0 36 9408049.0 37 4943950.0 38 1392038.0 39 171094.0 40 993.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 32.114734651523264 21.684157959233982 17.77615844371324 28.424948945529515 2 30.253317248180867 22.3767809941408 22.19919935091585 25.17070240676248 3 27.686071774515725 21.54987950606766 22.78393350493704 27.98011521447958 4 30.14868334138807 20.5466817155955 20.882823104571877 28.421811838444555 5 30.73388699964834 20.393966176340573 19.750691328057215 29.121455495953875 6 29.241097088240046 20.075311929125377 19.174820238035817 31.508770744598756 7 31.596344364357336 19.38738220893668 19.529939380649697 29.48633404605629 8 29.18798804703751 19.66960930258041 20.063523898423785 31.07887875195829 9 29.71015566207767 18.971077274095272 20.5045340043327 30.814233059494363 10-14 30.27145726825981 19.630598558280436 19.786719582409145 30.31122459105061 15-19 30.18899584936769 19.64735558677867 19.781344735525213 30.38230382832843 20-24 30.190747304474 19.72557397290668 19.862755094107204 30.220923628512114 25-29 31.145312714969247 19.504765948370835 19.491790181656825 29.858131155003093 30-34 30.628441548732603 19.656322830588703 19.649300688139668 30.06593493253903 35-39 30.302366827441556 19.773821550205543 19.814677014691085 30.109134607661815 40-44 31.14452103610428 19.55008767783695 19.47376943513236 29.83162185092641 45-49 30.294684194561388 19.71510872463515 19.778773460862336 30.211433619941126 50-54 30.28210496175796 19.82831152872523 19.816630845503017 30.072952664013798 55-59 30.349746383836983 19.79530294823868 19.72013801534672 30.13481265257762 60-64 30.219969534096226 19.737151339214705 19.784372361306893 30.258506765382183 65-69 30.1534607227186 19.868407496638877 19.86620560949621 30.111926171146315 70-74 30.3122891807346 19.833750016194333 19.746138182354002 30.107822620717066 75-79 30.18028233229199 19.79776308148699 19.828365565169328 30.193589021051693 80-84 30.096010893893627 19.893060014575404 19.912914196316862 30.098014895214103 85-89 30.217068637777427 19.877637522823893 19.816210482186033 30.089083357212644 90-94 30.065236150522473 19.840806997470988 19.907426767066134 30.186530084940404 95-99 29.94134716192562 19.955041483107216 20.034490562099947 30.069120792867217 100-101 30.57770892944595 19.631528123823212 19.63674897797918 30.15401396875166 >>END_MODULE >>Per base GC content pass #Base %GC 1 60.53968359705277 2 55.42401965494334 3 55.66618698899531 4 58.570495179832626 5 59.855342495602216 6 60.74986783283881 7 61.08267841041363 8 60.2668667989958 9 60.52438872157203 10-14 60.58268185931042 15-19 60.57129967769611 20-24 60.41167093298612 25-29 61.003443869972344 30-34 60.694376481271625 35-39 60.411501435103375 40-44 60.97614288703069 45-49 60.50611781450252 50-54 60.35505762577176 55-59 60.484559036414595 60-64 60.4784762994784 65-69 60.265386893864914 70-74 60.42011180145166 75-79 60.37387135334368 80-84 60.19402578910773 85-89 60.306151994990074 90-94 60.25176623546288 95-99 60.01046795479284 100-101 60.7317228981976 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 518.0 1 397.5 2 270.5 3 254.5 4 257.0 5 306.0 6 338.0 7 386.0 8 480.5 9 572.5 10 730.0 11 927.5 12 1143.0 13 1455.5 14 1838.5 15 2276.0 16 2897.5 17 3623.0 18 4491.5 19 5518.0 20 6845.0 21 8440.5 22 10437.0 23 12930.0 24 15906.0 25 20057.0 26 24677.5 27 29938.0 28 36889.5 29 45073.5 30 54343.0 31 65523.5 32 78607.5 33 93025.0 34 108916.0 35 125593.0 36 142355.5 37 160279.5 38 178257.0 39 195207.0 40 211816.0 41 227458.0 42 241936.0 43 256721.5 44 273213.5 45 292016.0 46 312798.5 47 337178.0 48 367573.0 49 404739.5 50 448396.5 51 498935.0 52 557306.0 53 623273.5 54 695761.0 55 773276.5 56 854772.0 57 939630.5 58 1029037.5 59 1122630.5 60 1215972.5 61 1307953.5 62 1392394.5 63 1466291.5 64 1524434.0 65 1555491.0 66 1558190.5 67 1527972.5 68 1462619.0 69 1366256.0 70 1243211.5 71 1099398.0 72 943954.5 73 787304.0 74 636173.5 75 496177.0 76 373511.0 77 270179.0 78 186816.0 79 123193.5 80 77443.0 81 46517.0 82 26528.0 83 14813.5 84 8545.0 85 4997.0 86 2969.0 87 1882.0 88 1253.5 89 806.0 90 523.0 91 369.0 92 232.0 93 124.5 94 88.0 95 60.0 96 25.0 97 11.0 98 7.5 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 3.1451522683011145E-5 3 3.145152268301114E-6 4 2.8306370414710026E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 4.40321317562156E-5 15-19 6.290304536602229E-7 20-24 0.001574463225511538 25-29 0.20942751215027364 30-34 0.2595534153952033 35-39 0.01866780231810659 40-44 0.3244663197423179 45-49 0.0 50-54 6.800416695533018E-4 55-59 0.1013346348948156 60-64 0.012507252165817379 65-69 0.011974605776353842 70-74 6.676748128343791E-5 75-79 0.0 80-84 4.111585157814714E-4 85-89 0.0019513824377523508 90-94 0.006988750903910286 95-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 30-31 21095.0 32-33 21662.0 34-35 22194.0 36-37 24175.0 38-39 25675.0 40-41 25211.0 42-43 26505.0 44-45 21839.0 46-47 24099.0 48-49 26133.0 50-51 28296.0 52-53 30258.0 54-55 30829.0 56-57 31680.0 58-59 33972.0 60-61 35259.0 62-63 36402.0 64-65 39660.0 66-67 43339.0 68-69 45920.0 70-71 47328.0 72-73 49828.0 74-75 56189.0 76-77 37896.0 78-79 53777.0 80-81 64455.0 82-83 76381.0 84-85 85304.0 86-87 105665.0 88-89 111519.0 90-91 138606.0 92-93 180713.0 94-95 244133.0 96-97 387788.0 98-99 549188.0 100-101 2.901199E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 3.1107378692220364 #Duplication Level Relative count 1 100.0 2 3.081113988835347 3 0.06810231857439146 4 0.012382239740798448 5 0.009802606461465437 6 0.003611486591066214 7 5.15926655866602E-4 8 0.0 9 0.0 10++ 0.009802606461465437 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 3180655 3.4312499 3.7258663 95-97 AAAAA 3108230 3.3571012 3.6536024 95-97 >>END_MODULE