##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002003_Wally_GTTTCG_L003_R2_004.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 60 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.41764375 34.0 31.0 34.0 31.0 34.0 2 32.584084 34.0 31.0 34.0 31.0 34.0 3 32.6143535 34.0 31.0 34.0 31.0 34.0 4 36.01073525 37.0 37.0 37.0 35.0 37.0 5 36.0117635 37.0 37.0 37.0 35.0 37.0 6 35.97400575 37.0 37.0 37.0 35.0 37.0 7 35.97568425 37.0 37.0 37.0 35.0 37.0 8 35.95214125 37.0 37.0 37.0 35.0 37.0 9 37.6841925 39.0 38.0 39.0 35.0 39.0 10-14 37.9458432 39.4 38.2 39.4 35.2 39.4 15-19 39.02938385 41.0 39.0 41.0 36.0 41.0 20-24 38.7851673 40.8 39.0 41.0 35.0 41.0 25-29 38.424139499999995 40.0 38.0 41.0 34.4 41.0 30-34 37.77186164999999 40.0 37.0 41.0 33.2 41.0 35-39 36.8295688 38.6 35.0 40.8 32.0 41.0 40-44 35.97957555000001 37.0 35.0 40.0 31.0 41.0 45-49 35.0784679 35.2 34.8 39.2 30.6 41.0 50-54 33.791811949999996 35.0 33.2 36.8 28.2 39.8 55-59 33.903495150000005 35.0 34.0 35.4 30.0 39.4 60-64 33.5678134 35.0 34.0 35.0 30.0 37.6 65-69 33.2207491 35.0 34.0 35.0 29.0 36.2 70-74 32.89869055 35.0 33.6 35.0 29.0 35.2 75-79 32.602439849999996 35.0 33.0 35.0 27.8 35.0 80-84 32.29386805 35.0 33.0 35.0 27.0 35.0 85-89 31.987226050000004 35.0 33.0 35.0 26.6 35.0 90-94 31.59962545 35.0 33.0 35.0 24.4 35.0 95-99 31.056267049999995 35.0 32.8 35.0 23.0 35.0 100-101 29.959953625 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 13642.0 3 2574.0 4 2771.0 5 2963.0 6 3715.0 7 4200.0 8 4951.0 9 5181.0 10 5538.0 11 5613.0 12 5504.0 13 5694.0 14 5503.0 15 5632.0 16 6026.0 17 6721.0 18 7404.0 19 8528.0 20 9703.0 21 11828.0 22 14285.0 23 17574.0 24 21151.0 25 25748.0 26 31206.0 27 37974.0 28 46615.0 29 57137.0 30 71440.0 31 90297.0 32 118761.0 33 164687.0 34 267669.0 35 619811.0 36 1296076.0 37 745525.0 38 217343.0 39 32689.0 40 321.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 32.71763050976101 22.57504472301003 17.7385554499031 26.968769317325858 2 30.364497358812688 23.264689649858173 21.35451353567842 25.01629945565072 3 28.902908409928145 21.419998088777774 21.473832515893914 28.203260985400163 4 30.934917916224464 20.476385621866726 19.889997883419973 28.69869857848884 5 30.628201017522784 20.475982770841284 19.586788310543028 29.309027901092904 6 29.701329010858718 19.708383049295723 18.42272200834978 32.16756593149579 7 31.858672843097875 19.223666642891914 19.348446569991005 29.56921394401921 8 29.182062525249542 19.636546768784534 19.957287912609427 31.2241027933565 9 30.138779155989614 18.658306271447984 19.912465690736475 31.290448881825927 10-14 30.302027838158395 19.55760661202542 19.707553342661353 30.432812207154836 15-19 30.285827387247515 19.546719588806738 19.67137500401509 30.496078019930657 20-24 30.190443767201668 19.6445612584297 19.76753841304097 30.397456561327658 25-29 30.263578599178892 19.733975365169613 19.693483220795684 30.30896281485581 30-34 30.275460939920812 19.596207838289 19.652331639478955 30.475999582311232 35-39 30.230083642726175 19.682286380894727 19.723834408278716 30.363795568100375 40-44 30.333510296585576 19.69524477318654 19.660570645222357 30.31067428500553 45-49 30.31997898019121 19.612933863616085 19.63508787792348 30.431999278269224 50-54 30.226033064010092 19.679834006749804 19.724387225689863 30.369745703550244 55-59 30.307612510792076 19.700952133366588 19.659286702425952 30.33214865341538 60-64 30.335781235046866 19.623398736379116 19.625428737800117 30.4153912907739 65-69 30.215798453176753 19.706316383264404 19.728571430000002 30.34931373355884 70-74 30.330788648854888 19.735748881086995 19.64191883886348 30.291543631194635 75-79 30.324389160590854 19.65560799035943 19.654852977184454 30.365149871865267 80-84 30.223395296074752 19.726435595075237 19.72436542552835 30.325803683321663 85-89 30.32487925990341 19.758395806716646 19.661260729008585 30.255464204371364 90-94 30.355129639233354 19.660830389494702 19.630435334783602 30.353604636488345 95-99 30.258291456683367 19.737258190848717 19.727087385320917 30.277362967147 100-101 30.481498134756773 19.78515358146325 19.591122784793196 30.14222549898678 >>END_MODULE >>Per base GC content pass #Base %GC 1 59.686399827086866 2 55.38079681446341 3 57.10616939532831 4 59.6336164947133 5 59.93722891861568 6 61.8688949423545 7 61.42788678711708 8 60.40616531860604 9 61.42922803781554 10-14 60.734840045313234 15-19 60.78190540717817 20-24 60.58790032852933 25-29 60.572541414034696 30-34 60.75146052223205 35-39 60.59387921082655 40-44 60.6441845815911 45-49 60.75197825846044 50-54 60.59577876756034 55-59 60.639761164207464 60-64 60.75117252582077 65-69 60.56511218673559 70-74 60.62233228004953 75-79 60.68953903245612 80-84 60.549198979396415 85-89 60.58034346427477 90-94 60.708734275721696 95-99 60.535654423830366 100-101 60.62372363374355 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 178.0 1 116.5 2 57.5 3 58.5 4 49.5 5 48.5 6 64.0 7 80.5 8 96.0 9 110.5 10 123.5 11 156.0 12 197.0 13 250.0 14 305.5 15 366.0 16 459.0 17 570.0 18 699.0 19 835.5 20 1008.5 21 1222.5 22 1444.0 23 1785.5 24 2209.5 25 2681.0 26 3241.5 27 3937.5 28 4815.5 29 5822.5 30 7071.5 31 8489.0 32 10085.5 33 11839.5 34 13659.5 35 15748.5 36 17888.5 37 19949.0 38 22144.5 39 24268.0 40 26095.0 41 27901.0 42 29754.5 43 31458.0 44 33436.0 45 35704.0 46 38110.0 47 40847.0 48 44380.5 49 48718.5 50 53621.0 51 59717.5 52 67087.0 53 74717.5 54 83039.5 55 92724.0 56 102860.0 57 113471.5 58 124608.5 59 135868.0 60 146770.5 61 157805.0 62 169087.5 63 178376.0 64 185410.5 65 189868.0 66 190270.5 67 186948.5 68 179658.0 69 168493.5 70 154187.0 71 136861.0 72 118119.0 73 99076.5 74 80247.0 75 62717.5 76 47240.5 77 34407.0 78 23990.5 79 15915.5 80 10066.5 81 6022.0 82 3456.5 83 1967.0 84 1147.5 85 763.0 86 573.0 87 425.0 88 341.5 89 284.5 90 255.0 91 223.5 92 176.5 93 161.0 94 140.5 95 115.0 96 90.0 97 61.0 98 48.0 99 38.5 100 23.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.065425 2 0.07335 3 0.06394999999999999 4 0.07465 5 0.041550000000000004 6 0.057249999999999995 7 0.10412500000000001 8 0.12195 9 0.1363 10-14 0.06451 15-19 0.06451 20-24 0.04241 25-29 0.04234 30-34 0.069135 35-39 0.031355 40-44 0.026324999999999998 45-49 0.01812 50-54 0.029670000000000002 55-59 0.025034999999999998 60-64 7.0E-5 65-69 2.0999999999999998E-4 70-74 4.4999999999999996E-5 75-79 0.001745 80-84 0.00819 85-89 7.999999999999999E-5 90-94 1.7999999999999998E-4 95-99 0.00792 100-101 0.0029875 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.5781819999000524 #Duplication Level Relative count 1 100.0 2 0.5106733751187467 3 0.008042100395570814 4 0.002513156373615879 5 0.0010052625494463517 6 5.026312747231759E-4 7 5.026312747231759E-4 8 0.0010052625494463517 9 5.026312747231759E-4 10++ 0.0015078938241695275 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 458455 3.9246047 4.108418 85-89 TTTTT 438715 3.818959 4.158973 95-97 >>END_MODULE