##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002003_Wally_GTTTCG_L003_R2_003.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 60 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.4985705 34.0 31.0 34.0 31.0 34.0 2 32.6679355 34.0 31.0 34.0 31.0 34.0 3 32.69426325 34.0 31.0 34.0 31.0 34.0 4 36.065611 37.0 37.0 37.0 35.0 37.0 5 36.01493825 37.0 37.0 37.0 35.0 37.0 6 36.04377575 37.0 37.0 37.0 35.0 37.0 7 36.05294 37.0 37.0 37.0 35.0 37.0 8 36.03189575 37.0 37.0 37.0 35.0 37.0 9 37.77517175 39.0 39.0 39.0 35.0 39.0 10-14 37.9832342 39.4 38.4 39.4 35.2 39.4 15-19 39.164917200000005 41.0 39.6 41.0 36.0 41.0 20-24 38.68914205 40.6 38.6 41.0 35.0 41.0 25-29 38.49310274999999 40.0 38.0 41.0 35.0 41.0 30-34 37.9260619 40.0 37.2 41.0 33.4 41.0 35-39 36.8699765 39.0 35.2 40.8 32.0 41.0 40-44 36.0206172 37.0 35.0 40.0 31.4 41.0 45-49 35.013322949999996 35.0 35.0 39.2 30.2 41.0 50-54 33.88879884999999 35.0 33.4 36.8 28.8 39.8 55-59 34.00689015 35.0 35.0 35.4 30.2 39.4 60-64 33.655773599999996 35.0 34.4 35.0 30.0 37.8 65-69 33.305931300000005 35.0 34.0 35.0 29.6 36.2 70-74 32.9755425 35.0 34.0 35.0 29.0 35.4 75-79 32.5964795 35.0 33.0 35.0 27.4 35.0 80-84 32.3408353 35.0 33.0 35.0 27.0 35.0 85-89 32.041267749999996 35.0 33.0 35.0 27.0 35.0 90-94 31.651079400000004 35.0 33.0 35.0 24.6 35.0 95-99 31.07470545 35.0 33.0 35.0 23.0 35.0 100-101 29.938008375 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 15571.0 3 2742.0 4 2952.0 5 3203.0 6 3684.0 7 4169.0 8 4652.0 9 5057.0 10 5313.0 11 5471.0 12 5448.0 13 5362.0 14 5337.0 15 5471.0 16 5863.0 17 6418.0 18 7171.0 19 8134.0 20 9559.0 21 11288.0 22 13442.0 23 16178.0 24 19907.0 25 23781.0 26 29070.0 27 35573.0 28 43501.0 29 53225.0 30 67034.0 31 85702.0 32 114945.0 33 162335.0 34 270041.0 35 638427.0 36 1299433.0 37 751615.0 38 219472.0 39 33166.0 40 288.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 32.68603495967039 22.594444589102693 17.74562803824052 26.973892412986395 2 30.341026848563008 23.25179644294158 21.422467848547235 24.984708859948178 3 28.879454725612884 21.411297530132938 21.453631098624946 28.255616645629228 4 30.940976376880286 20.484270073367348 19.90340036619829 28.67135318355408 5 30.707076067645833 20.445049461204928 19.61298174828093 29.234892722868306 6 29.640383190854674 19.684177861418647 18.47109051232257 32.204348435404114 7 31.782135124237605 19.267897049868488 19.335974504993057 29.613993320900857 8 29.22389370516763 19.664428824501968 19.9398196040181 31.171857866312298 9 30.12510406560045 18.63728834778254 19.925435823604897 31.312171763012113 10-14 30.303421068683832 19.61087319669555 19.70467287530968 30.38103285931094 15-19 30.283879470940295 19.54468100650041 19.692162428714894 30.4792770938444 20-24 30.249705249795294 19.626011415417295 19.76469708963688 30.359586245150528 25-29 30.255901608411772 19.72960161579522 19.72667524801092 30.287821527782082 30-34 30.277541663176237 19.629145112347683 19.670935144932 30.42237807954408 35-39 30.248977372473107 19.739501014887264 19.727236637117617 30.284284975522013 40-44 30.326895547884313 19.730505397909617 19.653565673329123 30.289033380876944 45-49 30.312755221714372 19.60754433512196 19.68054305929471 30.399157383868964 50-54 30.207428859628717 19.684785844219448 19.740092803847766 30.367692492304073 55-59 30.29339299168735 19.72472170075128 19.687691998107848 30.294193309453522 60-64 30.293429234743385 19.64299071439257 19.653925723140578 30.409654327723462 65-69 30.212626829571587 19.729935581400152 19.730830582787405 30.326607006240856 70-74 30.30854076225965 19.75044678787977 19.675741724380465 30.265270725480114 75-79 30.349544829804188 19.67867080222597 19.628074668872582 30.34370969909726 80-84 30.204184075059338 19.744681519239172 19.75521294150775 30.295921464193736 85-89 30.328270328270328 19.755524755524757 19.672989672989676 30.243215243215243 90-94 30.336282357520012 19.670100158755403 19.639135079794453 30.354482403930128 95-99 30.244873666742304 19.734329068435553 19.75242603919567 30.268371225626474 100-101 30.514704319725976 19.81392238119347 19.584478738897534 30.086894560183016 >>END_MODULE >>Per base GC content pass #Base %GC 1 59.65992737265678 2 55.32573570851119 3 57.13507137124212 4 59.61232956043436 5 59.941968790514146 6 61.844731626258785 7 61.39612844513845 8 60.39575157147993 9 61.437275828612556 10-14 60.684453927994774 15-19 60.763156564784694 20-24 60.60929149494583 25-29 60.54372313619386 30-34 60.69991974272032 35-39 60.53326234799512 40-44 60.61592892876126 45-49 60.71191260558333 50-54 60.57512135193278 55-59 60.587586301140874 60-64 60.70308356246685 65-69 60.539233835812446 70-74 60.57381148773976 75-79 60.693254528901456 80-84 60.50010553925308 85-89 60.571485571485574 90-94 60.69076476145015 95-99 60.513244892368775 100-101 60.60159887990899 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 172.0 1 124.0 2 63.0 3 59.5 4 74.5 5 74.5 6 73.5 7 92.0 8 111.0 9 118.5 10 145.5 11 184.0 12 223.0 13 261.0 14 302.5 15 397.0 16 508.0 17 591.5 18 724.5 19 890.5 20 1063.5 21 1300.0 22 1542.0 23 1817.0 24 2211.5 25 2774.5 26 3344.5 27 3952.5 28 4716.0 29 5793.0 30 7171.5 31 8599.0 32 10162.5 33 11932.0 34 13867.0 35 15898.5 36 17932.5 37 20080.0 38 22327.5 39 24457.0 40 26274.0 41 28050.0 42 29941.5 43 31785.0 44 33672.5 45 35611.5 46 37941.0 47 40889.0 48 44618.0 49 48984.5 50 53843.5 51 60134.5 52 67306.5 53 74971.5 54 83620.0 55 92873.0 56 102735.5 57 113280.0 58 124279.0 59 135632.5 60 146913.0 61 158274.5 62 169600.0 63 179020.0 64 185857.0 65 189710.5 66 189934.0 67 186533.0 68 178962.0 69 167411.0 70 152992.0 71 136172.0 72 117519.5 73 98098.0 74 79288.5 75 62205.0 76 47100.5 77 34298.0 78 23889.5 79 15860.5 80 10107.5 81 6178.5 82 3688.5 83 2140.0 84 1310.5 85 872.5 86 623.0 87 498.0 88 416.5 89 388.5 90 319.5 91 260.0 92 214.5 93 180.0 94 155.5 95 127.0 96 112.5 97 86.5 98 73.0 99 61.5 100 41.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.1478 2 0.146425 3 0.13835 4 0.149725 5 0.131325 6 0.10200000000000001 7 0.11377500000000002 8 0.1419 9 0.153125 10-14 0.079615 15-19 0.07554999999999999 20-24 0.050960000000000005 25-29 0.04674 30-34 0.08383 35-39 0.035695 40-44 0.032135 45-49 0.02565 50-54 0.039705 55-59 0.039705 60-64 7.999999999999999E-5 65-69 1.55E-4 70-74 8.5E-5 75-79 0.00224 80-84 0.013505 85-89 9.999999999999999E-5 90-94 2.55E-4 95-99 0.01089 100-101 0.008125 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.6292794750011177 #Duplication Level Relative count 1 100.0 2 0.5010830832943826 3 0.005528499414481653 4 0.002512954279309842 5 0.002010363423447874 6 0.0015077725675859052 7 0.001005181711723937 8 5.025908558619685E-4 9 5.025908558619685E-4 10++ 0.0035181359910337793 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 461680 3.9452062 4.1728845 60-64 TTTTT 449380 3.9083054 4.1524515 95-97 >>END_MODULE