##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002003_Wally_GTTTCG_L003_R1_005.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 64685 Filtered Sequences 0 Sequence length 101 %GC 60 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.396135116333 34.0 31.0 34.0 31.0 34.0 2 32.67879724820283 34.0 31.0 34.0 31.0 34.0 3 32.70260493159156 34.0 31.0 34.0 31.0 34.0 4 36.217051866738814 37.0 37.0 37.0 35.0 37.0 5 36.1350081162557 37.0 35.0 37.0 35.0 37.0 6 36.07674113009198 37.0 36.0 37.0 35.0 37.0 7 36.055963515498185 37.0 36.0 37.0 35.0 37.0 8 36.038045914817964 37.0 35.0 37.0 35.0 37.0 9 37.80822447244338 39.0 38.0 39.0 35.0 39.0 10-14 38.024435340496254 39.2 38.2 39.4 35.2 39.4 15-19 39.019744917677976 40.0 38.4 41.0 35.8 41.0 20-24 38.84032465022803 40.0 38.0 41.0 35.0 41.0 25-29 38.3168524387416 40.0 37.8 41.0 33.6 41.0 30-34 37.68293112777305 39.6 36.6 41.0 32.8 41.0 35-39 36.713745072273326 38.4 35.0 40.2 31.6 41.0 40-44 34.025279431089125 36.2 31.8 39.4 24.0 40.6 45-49 34.62715621859782 35.0 33.6 38.8 28.8 40.8 50-54 34.03616912730927 35.0 33.6 36.8 28.6 39.6 55-59 33.57095462626575 35.0 33.0 35.2 28.2 39.0 60-64 33.06579577954704 35.0 33.0 35.0 27.0 37.2 65-69 32.68649609646749 35.0 33.0 35.0 27.0 36.0 70-74 32.30512174383551 35.0 33.0 35.0 26.0 35.0 75-79 31.619491381309423 34.2 31.6 35.0 25.2 35.0 80-84 31.762708510473836 35.0 33.0 35.0 25.0 35.0 85-89 31.462320476153668 34.6 32.0 35.0 24.4 35.0 90-94 31.081085259333697 34.0 31.6 35.0 24.0 35.0 95-99 30.45632526860941 34.0 31.0 35.0 21.0 35.0 100-101 28.65590167735951 33.0 29.0 34.5 7.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 1.0 3 0.0 4 1.0 5 3.0 6 5.0 7 25.0 8 60.0 9 66.0 10 90.0 11 108.0 12 117.0 13 101.0 14 127.0 15 144.0 16 126.0 17 155.0 18 172.0 19 200.0 20 157.0 21 230.0 22 234.0 23 315.0 24 361.0 25 528.0 26 646.0 27 801.0 28 1009.0 29 1295.0 30 1552.0 31 1962.0 32 2561.0 33 3493.0 34 5823.0 35 12831.0 36 18999.0 37 8193.0 38 2041.0 39 150.0 40 3.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 32.0149057566527 21.79734974409723 17.749292595055124 28.43845190419495 2 30.010048697534202 22.484347221148642 22.393135966607407 25.112468114709745 3 27.573626033856378 21.64489448867589 22.99760377212646 27.78387570534127 4 30.207930741284688 20.64002473525547 21.13936770503208 28.012676818427767 5 30.851047383473755 20.398855994434566 19.61505758676664 29.13503903532504 6 29.246347684934683 20.057200278271626 19.18373656952926 31.512715467264435 7 31.582283373270464 19.2857694983381 19.54085182036021 29.59109530803123 8 29.060833268918607 19.669165958104664 20.08966530107444 31.1803354719023 9 30.048697534204223 18.90701089897194 20.607559712452655 30.436731854371185 10-14 30.30532580969313 19.569915745536058 19.752338254618536 30.372420190152276 15-19 30.28491922393136 19.52199118806524 19.845095462626574 30.347994125376825 20-24 30.11579191466337 19.742753343124374 19.875086959882506 30.266367782329752 25-29 30.44833343639849 19.866736750973963 19.71739533733226 29.96753447529528 30-34 30.106838399960406 19.84459869096668 19.79387055664848 30.254692352424435 35-39 30.22371904302432 19.88606843316262 19.820505207946756 30.0697073158663 40-44 31.919847859362676 19.622431467136696 19.311347155866844 29.146373517633776 45-49 30.317075056040814 19.66081780938394 19.726984617763005 30.295122516812246 50-54 30.159696993120505 19.87879724820283 19.778619463554147 30.18288629512252 55-59 30.421137256114527 19.649052286571226 19.726044340001856 30.20376611731239 60-64 30.260532819464338 19.64992158961209 19.6771409747633 30.41240461616027 65-69 30.228178039487357 19.844809243406402 19.77305903310406 30.153953684002175 70-74 30.203292880884288 19.74089819896421 19.69080930663987 30.364999613511635 75-79 30.281208935611037 19.80892015150344 19.68029682306563 30.229574089819895 80-84 30.20626876470643 19.776879717265537 19.85541706734114 30.16143445068689 85-89 30.369662500889135 19.72636377412641 19.83738932237304 30.06658440261142 90-94 30.400697672261035 19.573789046916605 19.699963817529014 30.32554946329335 95-99 30.232673190792013 19.83395946384676 19.785105823786775 30.148261521574447 100-101 30.730463013063307 19.575635773363224 19.45041354255237 30.243487671021104 >>END_MODULE >>Per base GC content pass #Base %GC 1 60.45335766084765 2 55.12251681224395 3 55.357501739197644 4 58.220607559712455 5 59.98608641879879 6 60.75906315219912 7 61.17337868130169 8 60.2411687408209 9 60.485429388575405 10-14 60.6777459998454 15-19 60.63291334930818 20-24 60.38215969699312 25-29 60.41586791169378 30-34 60.36153075238484 35-39 60.29342635889062 40-44 61.06622137699645 45-49 60.612197572853056 50-54 60.34258328824302 55-59 60.62490337342692 60-64 60.672937435624604 65-69 60.38213172348953 70-74 60.56829249439591 75-79 60.51078302543094 80-84 60.36770321539332 85-89 60.43624690350056 90-94 60.72624713555438 95-99 60.38093471236646 100-101 60.97395068408441 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2.0 1 1.5 2 1.0 3 0.5 4 0.0 5 1.0 6 1.0 7 0.5 8 0.5 9 1.0 10 3.0 11 2.5 12 1.5 13 2.5 14 3.5 15 5.0 16 6.5 17 13.0 18 13.5 19 10.0 20 13.5 21 15.5 22 18.5 23 22.0 24 25.5 25 37.5 26 53.5 27 66.0 28 79.5 29 91.5 30 112.5 31 139.0 32 164.5 33 184.0 34 219.0 35 253.5 36 283.5 37 335.5 38 387.5 39 407.5 40 420.0 41 463.0 42 484.5 43 500.5 44 568.0 45 617.5 46 634.5 47 672.0 48 740.0 49 818.0 50 884.0 51 1011.0 52 1121.0 53 1195.0 54 1349.0 55 1507.5 56 1658.5 57 1844.0 58 2017.0 59 2208.0 60 2433.5 61 2617.0 62 2787.0 63 2922.5 64 3035.0 65 3090.5 66 3055.0 67 2986.5 68 2859.5 69 2670.5 70 2447.0 71 2188.0 72 1884.0 73 1587.0 74 1260.5 75 958.0 76 738.0 77 535.5 78 354.0 79 233.0 80 157.5 81 91.5 82 43.5 83 21.0 84 14.5 85 10.5 86 5.0 87 4.0 88 2.5 89 1.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.01855144160160779 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.0 25-29 0.0015459534668006492 30-34 0.041122362216897274 35-39 0.02257092061528948 40-44 0.012367627734405194 45-49 0.0 50-54 0.0 55-59 0.0046378604004019474 60-64 0.03895802736337636 65-69 0.025044446162170518 70-74 0.0 75-79 0.0 80-84 0.0037102883203215583 85-89 0.023498492695369872 90-94 0.019788204375048312 95-99 0.0030919069336012984 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 64685.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.006183813867202597 #Duplication Level Relative count 1 100.0 2 0.003092098143195065 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 6835 3.5895514 5.0085254 95-97 TTTTT 6305 3.3039842 4.5739527 1 >>END_MODULE