##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002003_Wally_GTTTCG_L003_R1_004.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 60 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.644221 34.0 31.0 34.0 31.0 34.0 2 32.8938945 34.0 31.0 34.0 31.0 34.0 3 32.938315 34.0 31.0 34.0 31.0 34.0 4 36.369516 37.0 37.0 37.0 35.0 37.0 5 36.28872925 37.0 37.0 37.0 35.0 37.0 6 36.25646575 37.0 37.0 37.0 35.0 37.0 7 36.248622 37.0 37.0 37.0 35.0 37.0 8 36.23267675 37.0 37.0 37.0 35.0 37.0 9 38.00417475 39.0 38.0 39.0 35.0 39.0 10-14 38.2640309 39.4 38.2 39.4 35.2 39.4 15-19 39.382115899999995 41.0 39.0 41.0 36.0 41.0 20-24 38.962660899999996 40.4 38.8 41.0 35.2 41.0 25-29 34.84062290000001 38.8 29.2 41.0 23.8 41.0 30-34 35.761803799999996 38.8 34.8 40.2 26.0 41.0 35-39 36.3677774 38.0 35.0 40.0 30.6 41.0 40-44 34.9356811 36.0 34.4 39.6 27.6 41.0 45-49 34.9584616 35.0 34.6 38.8 29.4 41.0 50-54 33.7500783 35.0 33.6 36.8 26.8 40.2 55-59 33.7682648 35.0 33.6 35.0 29.2 39.0 60-64 32.808677 35.0 33.0 35.0 26.0 37.2 65-69 32.95440975 35.0 33.0 35.0 28.6 36.0 70-74 32.0229801 35.0 33.0 35.0 24.4 35.0 75-79 32.01790875 34.4 32.4 35.0 26.6 35.0 80-84 31.799041800000005 35.0 33.0 35.0 25.0 35.0 85-89 31.513822450000003 35.0 32.6 35.0 24.2 35.0 90-94 31.324262749999995 35.0 32.8 35.0 24.0 35.0 95-99 30.881434050000003 35.0 32.0 35.0 23.0 35.0 100-101 29.416724375 33.5 29.0 35.0 10.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 92.0 3 16.0 4 61.0 5 141.0 6 478.0 7 1481.0 8 3804.0 9 5144.0 10 5338.0 11 5968.0 12 6260.0 13 6303.0 14 6491.0 15 7067.0 16 7652.0 17 8272.0 18 8632.0 19 9765.0 20 10813.0 21 12348.0 22 14914.0 23 18693.0 24 24042.0 25 30177.0 26 38368.0 27 48319.0 28 60019.0 29 75522.0 30 97396.0 31 130418.0 32 187994.0 33 299828.0 34 488957.0 35 804705.0 36 987078.0 37 457829.0 38 117952.0 39 11595.0 40 68.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 32.10216199417604 21.72730016123762 17.809918626132497 28.36061921845384 2 30.224600000000002 22.391875 22.260225 25.123299999999997 3 27.661974999999998 21.5558 22.817275000000002 27.964949999999998 4 30.145625 20.573475 20.930375 28.350524999999998 5 30.742725 20.3842 19.740725 29.132350000000002 6 29.264250000000004 20.0612 19.165925 31.508625000000002 7 31.658125 19.33645 19.518774999999998 29.486649999999997 8 29.213050000000003 19.646325 20.036375 31.10425 9 29.717875 18.9224 20.543074999999998 30.816650000000003 10-14 30.28959 19.6109 19.768069999999998 30.331439999999997 15-19 30.213245 19.620325 19.76321 30.403219999999997 20-24 30.26190511667089 19.708599532334432 19.796750581331917 30.232744769662762 25-29 33.68394241703272 18.79992242360811 18.69739575972403 28.81873939963514 30-34 31.192829429001655 19.595559621707746 19.429859750271877 29.781751199018718 35-39 30.446494238860648 19.688209514163713 19.75405467924552 30.11124156773012 40-44 30.533854133797306 19.632077555015297 19.638948881872047 30.195119429315355 45-49 30.431745 19.67927 19.690985 30.198000000000004 50-54 30.5101739997052 19.795633997213173 19.706403122750604 29.987788880331028 55-59 30.376563079457092 19.691129884239707 19.67415976799441 30.25814726830879 60-64 30.40513539939634 19.65581120855433 19.649034361863606 30.29001903018573 65-69 30.291313982082922 19.762592672535803 19.765133221802554 30.180960123578714 70-74 30.53543 19.753165 19.59795 30.113455000000002 75-79 30.35192 19.648145 19.69407 30.305864999999997 80-84 30.325678844057936 19.753325437488613 19.746105274673944 30.174890443779507 85-89 30.47177290826094 19.77635701584385 19.608104944085504 30.143765131809708 90-94 30.342412072671326 19.65092382027926 19.67464454053095 30.332019566518465 95-99 30.333761341465486 19.72690481119141 19.73431995207909 30.20501389526401 100-101 30.766225000000002 19.5749875 19.4423875 30.2164 >>END_MODULE >>Per base GC content pass #Base %GC 1 60.46278121262989 2 55.3479 3 55.62692500000001 4 58.49615 5 59.875075 6 60.772875000000006 7 61.144774999999996 8 60.317299999999996 9 60.534524999999995 10-14 60.62103 15-19 60.616465 20-24 60.494649886333654 25-29 62.50268181666786 30-34 60.974580628020384 35-39 60.55773580659077 40-44 60.72897356311265 45-49 60.629745 50-54 60.497962880036226 55-59 60.63471034776589 60-64 60.69515442958207 65-69 60.47227410566164 70-74 60.648885 75-79 60.657785 80-84 60.500569287837436 85-89 60.615538040070646 90-94 60.674431639189784 95-99 60.538775236729506 100-101 60.982625 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 49.0 1 42.5 2 29.0 3 27.5 4 31.0 5 28.5 6 27.0 7 40.0 8 54.5 9 62.0 10 86.0 11 108.5 12 131.5 13 176.5 14 211.0 15 258.0 16 339.5 17 424.5 18 522.5 19 638.5 20 825.0 21 1040.5 22 1226.0 23 1511.5 24 1875.0 25 2362.0 26 2990.5 27 3595.5 28 4415.0 29 5399.5 30 6445.5 31 7809.5 32 9444.0 33 11317.0 34 13281.5 35 15236.0 36 17308.0 37 19675.0 38 21921.5 39 23863.5 40 26034.0 41 28091.0 42 29782.0 43 31676.5 44 33692.0 45 35716.5 46 38057.5 47 41319.5 48 45185.5 49 49282.5 50 54649.5 51 61089.0 52 67983.0 53 75907.5 54 84915.0 55 94337.5 56 104187.0 57 114382.0 58 124862.5 59 136127.0 60 148016.0 61 159410.5 62 169591.5 63 178871.5 64 185932.0 65 189755.5 66 190733.0 67 187541.5 68 179756.0 69 168228.5 70 153646.0 71 136444.0 72 117236.5 73 97902.5 74 79526.5 75 62026.5 76 46671.5 77 33982.5 78 23514.0 79 15559.0 80 9812.5 81 5818.0 82 3253.0 83 1799.5 84 1035.5 85 594.5 86 372.0 87 260.0 88 181.0 89 142.0 90 106.0 91 66.0 92 54.0 93 37.0 94 18.5 95 12.5 96 5.5 97 2.5 98 2.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.007825 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.0011899999999999999 25-29 0.021130000000000003 30-34 0.069325 35-39 0.030625 40-44 0.9652700000000001 45-49 0.0 50-54 9.8E-4 55-59 6.85E-4 60-64 0.02725 65-69 0.02162 70-74 0.0 75-79 0.0 80-84 0.002255 85-89 0.01609 90-94 0.024115 95-99 0.0019000000000000002 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.15347928029716712 #Duplication Level Relative count 1 100.0 2 0.1366913679150811 3 0.001001401962747847 4 0.001001401962747847 5 0.0 6 0.0 7 0.0 8 5.007009813739235E-4 9 0.0 10++ 0.001001401962747847 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 419930 3.6542354 4.315714 95-97 AAAAA 412110 3.571741 4.0733533 95-97 >>END_MODULE