##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002003_Wally_GTTTCG_L003_R1_002.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 60 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.7627195 34.0 31.0 34.0 31.0 34.0 2 33.00077725 34.0 31.0 34.0 31.0 34.0 3 33.033694 34.0 31.0 34.0 31.0 34.0 4 36.43258425 37.0 37.0 37.0 35.0 37.0 5 36.367651 37.0 37.0 37.0 35.0 37.0 6 36.332247 37.0 37.0 37.0 35.0 37.0 7 36.329147 37.0 37.0 37.0 35.0 37.0 8 36.30697 37.0 37.0 37.0 35.0 37.0 9 38.08698025 39.0 38.0 39.0 37.0 39.0 10-14 38.35332375 39.4 38.4 39.4 36.2 39.4 15-19 39.484551950000004 41.0 39.6 41.0 37.0 41.0 20-24 39.245903549999994 40.6 39.0 41.0 35.8 41.0 25-29 38.827196550000004 40.0 38.2 41.0 35.0 41.0 30-34 38.1051022 40.0 37.2 41.0 33.6 41.0 35-39 37.130701 38.6 35.2 40.6 32.6 41.0 40-44 36.23169475 37.0 35.0 40.0 31.8 41.0 45-49 35.7211394 35.2 35.0 39.4 32.0 41.0 50-54 34.89114059999999 35.0 35.0 37.6 31.2 40.6 55-59 34.2481631 35.0 34.2 35.4 31.0 39.4 60-64 33.722344250000006 35.0 34.0 35.0 30.0 37.6 65-69 33.292787249999996 35.0 33.2 35.0 29.2 36.2 70-74 32.964021949999996 35.0 33.0 35.0 29.0 35.2 75-79 32.28663815 34.4 32.6 35.0 27.6 35.0 80-84 32.507491849999994 35.0 33.0 35.0 28.2 35.0 85-89 32.2125174 35.0 33.0 35.0 27.0 35.0 90-94 31.7875545 35.0 33.0 35.0 26.2 35.0 95-99 31.25282085 35.0 33.0 35.0 24.2 35.0 100-101 29.924609625000002 34.0 30.5 35.0 19.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 61.0 3 19.0 4 45.0 5 123.0 6 304.0 7 847.0 8 2021.0 9 3141.0 10 4013.0 11 4388.0 12 4667.0 13 4757.0 14 5197.0 15 5542.0 16 6182.0 17 6977.0 18 7565.0 19 8244.0 20 8797.0 21 9890.0 22 11739.0 23 14403.0 24 18244.0 25 23349.0 26 29382.0 27 36195.0 28 45460.0 29 56831.0 30 71741.0 31 91642.0 32 120544.0 33 167760.0 34 275563.0 35 669525.0 36 1345583.0 37 717042.0 38 199746.0 39 22325.0 40 146.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 32.096672933143886 21.66015058047214 17.789802902248205 28.453373584135772 2 30.288925 22.38685 22.164875000000002 25.159350000000003 3 27.641650000000002 21.551175 22.79575 28.011425000000003 4 30.176625 20.51465 20.85795 28.450775 5 30.800975 20.3296 19.732425 29.137 6 29.25505 20.050625 19.139875 31.55445 7 31.645450000000004 19.35265 19.50555 29.49635 8 29.239475 19.623575 20.000899999999998 31.136049999999997 9 29.79135 18.924625 20.44385 30.840175 10-14 30.294105 19.603105000000003 19.747895 30.354895 15-19 30.239054999999997 19.600965000000002 19.73585 30.424129999999998 20-24 30.15899603514925 19.714687347998055 19.85192910469254 30.274387512160157 25-29 30.316693845948844 19.68944368013564 19.716328794397377 30.277533679518136 30-34 30.24370471910715 19.625158393711192 19.76556930396406 30.3655675832176 35-39 30.216778107579827 19.71839852914696 19.799900901036498 30.26492246223671 40-44 30.355178288149563 19.65808431596188 19.675744454593968 30.31099294129459 45-49 30.26512 19.616715000000003 19.74279 30.375375 50-54 30.21829479885405 19.722487348799724 19.795162781218547 30.26405507112767 55-59 30.37314333957251 19.649854212171977 19.661604238609538 30.31539820964597 60-64 30.28449728332163 19.625612053597354 19.717175927039825 30.372714736041186 65-69 30.24008386755049 19.72452450630032 19.772665320557802 30.262726305591386 70-74 30.39544 19.65801 19.65529 30.291259999999998 75-79 30.316405000000003 19.652 19.6947 30.336895000000002 80-84 30.25534658715739 19.734110124731824 19.75346157125245 30.257081716858337 85-89 30.420988235449464 19.670896290902192 19.633753344728305 30.274362128920036 90-94 30.35078296674232 19.640350578375486 19.668558160367432 30.340308294514767 95-99 30.334873342997774 19.691939727098752 19.72646368009137 30.246723249812103 100-101 30.75804119929074 19.571394374551165 19.42404244055703 30.24652198560106 >>END_MODULE >>Per base GC content pass #Base %GC 1 60.550046517279654 2 55.448275 3 55.653074999999994 4 58.627399999999994 5 59.937975 6 60.80950000000001 7 61.1418 8 60.375524999999996 9 60.631524999999996 10-14 60.649 15-19 60.663185 20-24 60.433383547309404 25-29 60.594227525466984 30-34 60.60927230232475 35-39 60.481700569816546 40-44 60.66617122944415 45-49 60.64049500000001 50-54 60.482349869981725 55-59 60.68854154921849 60-64 60.65721201936282 65-69 60.502810173141874 70-74 60.6867 75-79 60.6533 80-84 60.51242830401573 85-89 60.6953503643695 90-94 60.69109126125708 95-99 60.58159659280987 100-101 61.0045631848918 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 82.0 1 53.0 2 23.0 3 23.0 4 25.0 5 34.0 6 37.5 7 45.0 8 57.0 9 66.0 10 85.5 11 115.0 12 150.5 13 190.0 14 248.5 15 308.0 16 369.0 17 452.0 18 583.0 19 719.0 20 877.5 21 1044.5 22 1277.0 23 1608.5 24 2005.5 25 2574.0 26 3189.5 27 3766.0 28 4643.5 29 5781.0 30 6911.0 31 8332.0 32 9989.5 33 11660.0 34 13677.0 35 15794.0 36 17806.0 37 20030.0 38 22226.0 39 24352.5 40 26220.5 41 28017.5 42 29915.0 43 31593.0 44 33532.5 45 35926.0 46 38546.5 47 41300.0 48 45038.0 49 49877.0 50 55125.0 51 61048.0 52 68007.0 53 76116.5 54 85107.5 55 94438.0 56 104328.5 57 114728.0 58 125375.0 59 136269.0 60 147505.5 61 159040.5 62 169488.0 63 178769.0 64 185959.0 65 189039.5 66 189656.0 67 186701.5 68 178663.0 69 167351.5 70 152726.0 71 135275.0 72 116476.5 73 97778.5 74 79373.0 75 61961.5 76 46740.5 77 33914.0 78 23519.0 79 15389.5 80 9585.0 81 5716.0 82 3230.0 83 1756.0 84 950.0 85 581.5 86 397.0 87 242.5 88 162.0 89 123.0 90 86.0 91 58.5 92 40.0 93 26.0 94 19.0 95 10.5 96 4.0 97 4.0 98 2.5 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.010275000000000001 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.0012799999999999999 25-29 4.25E-4 30-34 0.043379999999999995 35-39 0.009045000000000001 40-44 7.849999999999999E-4 45-49 0.0 50-54 5.949999999999999E-4 55-59 2.25E-4 60-64 0.042455 65-69 0.032850000000000004 70-74 0.0 75-79 0.0 80-84 0.007475 85-89 0.034855 90-94 0.044605 95-99 0.01145 100-101 0.0013125 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.5518813455107157 #Duplication Level Relative count 1 100.0 2 0.5212653124827208 3 0.0035186665259200056 4 5.026666465600008E-4 5 0.0010053332931200015 6 0.002513333232800004 7 0.0015079999396800023 8 0.0010053332931200015 9 5.026666465600008E-4 10++ 0.0015079999396800023 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 414985 3.5352123 3.8290699 9 AAAAA 407505 3.5093913 3.8493652 95-97 >>END_MODULE