##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002003_Wally_GTTTCG_L003_R1_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 60 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.78265375 34.0 31.0 34.0 31.0 34.0 2 33.01285075 34.0 31.0 34.0 31.0 34.0 3 33.056008 34.0 31.0 34.0 31.0 34.0 4 36.43539625 37.0 37.0 37.0 35.0 37.0 5 36.373006 37.0 37.0 37.0 35.0 37.0 6 36.33383575 37.0 37.0 37.0 35.0 37.0 7 36.3286255 37.0 37.0 37.0 35.0 37.0 8 36.3058115 37.0 37.0 37.0 35.0 37.0 9 38.09052775 39.0 39.0 39.0 37.0 39.0 10-14 38.36951985 39.4 38.6 39.4 36.6 39.4 15-19 39.49650335 41.0 39.6 41.0 37.0 41.0 20-24 39.2699411 40.8 39.0 41.0 36.0 41.0 25-29 38.83549925 40.0 38.2 41.0 35.0 41.0 30-34 38.112122299999996 40.0 37.2 41.0 33.6 41.0 35-39 37.1481082 38.8 35.2 40.6 32.6 41.0 40-44 36.2282802 37.2 35.0 40.0 31.8 41.0 45-49 35.700574700000004 35.2 35.0 39.4 32.0 41.0 50-54 34.858211849999996 35.0 35.0 37.6 31.0 40.6 55-59 34.1963223 35.0 34.2 35.4 30.8 39.4 60-64 33.636697149999996 35.0 34.0 35.0 30.0 37.6 65-69 33.19395975 35.0 33.0 35.0 29.0 36.2 70-74 32.85073835 35.0 33.0 35.0 29.0 35.2 75-79 32.165904049999995 34.4 32.6 35.0 26.8 35.0 80-84 32.376397850000004 35.0 33.0 35.0 27.0 35.0 85-89 32.047396400000004 35.0 33.0 35.0 27.0 35.0 90-94 31.59491775 35.0 33.0 35.0 25.0 35.0 95-99 30.98900335 35.0 32.4 35.0 23.0 35.0 100-101 29.735809 34.0 30.5 35.0 11.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 68.0 3 19.0 4 38.0 5 110.0 6 343.0 7 911.0 8 2107.0 9 3358.0 10 4407.0 11 4842.0 12 5061.0 13 5361.0 14 5623.0 15 6168.0 16 6865.0 17 7663.0 18 8453.0 19 9082.0 20 9609.0 21 10939.0 22 12817.0 23 15794.0 24 19552.0 25 24409.0 26 30547.0 27 37980.0 28 47355.0 29 57994.0 30 73107.0 31 93254.0 32 123217.0 33 171367.0 34 277383.0 35 647973.0 36 1307769.0 37 732126.0 38 211035.0 39 25153.0 40 141.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 32.11763205664822 21.687644708482733 17.75862500062509 28.436098234243968 2 30.288375000000002 22.364375 22.154925 25.192325 3 27.669349999999998 21.544025 22.765575 28.02105 4 30.139875 20.536775 20.86085 28.462500000000002 5 30.737150000000003 20.399800000000003 19.719225 29.143825 6 29.301225 20.064899999999998 19.1433 31.490575 7 31.602175 19.422475 19.4756 29.499750000000002 8 29.180650000000004 19.672025 20.01295 31.134375 9 29.715075000000002 18.96835 20.467675 30.8489 10-14 30.263 19.6061 19.791719999999998 30.33918 15-19 30.209855 19.637845000000002 19.773815 30.378484999999998 20-24 30.150324894093668 19.703358262314104 19.866925323259075 30.279391520333153 25-29 30.29835633489146 19.71952627508659 19.739096395442832 30.24302099457912 30-34 30.205859792543865 19.655719891448896 19.793267248235935 30.345153067771303 35-39 30.192609750352922 19.759764129690666 19.826107654833645 30.22151846512277 40-44 30.34298362760523 19.69190939404544 19.68560429978428 30.279502678565045 45-49 30.263370000000002 19.623255 19.76078 30.352594999999997 50-54 30.203006116533643 19.72989351441433 19.80756394160168 30.25953642745035 55-59 30.3752530375253 19.683536968353696 19.6710419671042 30.2701680270168 60-64 30.27256875012879 19.65295782053034 19.734758555041417 30.339714874299457 65-69 30.240119839846745 19.739763471354223 19.788574701088113 30.231541987710912 70-74 30.402649999999998 19.6949 19.646365 30.256085 75-79 30.299545 19.654445000000003 19.714154999999998 30.331855 80-84 30.27952771930379 19.734388361975725 19.767680948809723 30.218402969910763 85-89 30.413400820622122 19.67850681622884 19.645868777479894 30.26222358566915 90-94 30.366902287950598 19.633888085342708 19.677603732242737 30.321605894463953 95-99 30.341377152724657 19.718646088498364 19.73267243011794 30.207304328659035 100-101 30.77243848639827 19.563976620818814 19.436675634236163 30.22690925854675 >>END_MODULE >>Per base GC content pass #Base %GC 1 60.55373029089218 2 55.480700000000006 3 55.6904 4 58.602374999999995 5 59.88097500000001 6 60.791799999999995 7 61.101925 8 60.315025 9 60.563975000000006 10-14 60.602180000000004 15-19 60.588339999999995 20-24 60.42971641442683 25-29 60.54137732947058 30-34 60.55101286031517 35-39 60.41412821547569 40-44 60.62248630617027 45-49 60.615965 50-54 60.462542543983986 55-59 60.645421064542106 60-64 60.612283624428244 65-69 60.47166182755767 70-74 60.658735 75-79 60.6314 80-84 60.49793068921455 85-89 60.67562440629127 90-94 60.68850818241456 95-99 60.548681481383696 100-101 60.99934774494502 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 70.0 1 45.0 2 21.5 3 23.5 4 23.5 5 27.0 6 35.5 7 38.5 8 56.0 9 66.5 10 75.5 11 109.0 12 135.0 13 186.0 14 244.0 15 265.0 16 353.0 17 472.5 18 571.5 19 695.0 20 878.5 21 1082.0 22 1364.0 23 1695.0 24 2011.5 25 2507.0 26 3109.0 27 3823.5 28 4742.0 29 5749.5 30 6978.5 31 8451.5 32 10027.0 33 11848.5 34 13841.0 35 15888.5 36 17925.5 37 20086.0 38 22188.5 39 24294.0 40 26650.0 41 28660.0 42 30281.5 43 31863.5 44 33880.5 45 36434.5 46 38948.5 47 41714.5 48 45188.5 49 49844.0 50 55331.5 51 61265.0 52 68270.0 53 76524.5 54 85319.5 55 94675.5 56 104670.0 57 114761.0 58 125668.5 59 136992.5 60 147934.5 61 158469.0 62 168776.5 63 178331.5 64 185406.5 65 189550.0 66 189565.0 67 185165.5 68 177846.5 69 166652.5 70 151841.0 71 134860.5 72 115565.0 73 96404.0 74 78648.5 75 61714.5 76 46442.5 77 33677.5 78 23713.5 79 15754.0 80 9824.0 81 5984.5 82 3541.0 83 2032.5 84 1174.5 85 696.0 86 459.5 87 319.5 88 228.5 89 150.0 90 113.5 91 90.0 92 58.0 93 39.0 94 25.0 95 13.5 96 7.0 97 6.5 98 5.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0145 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.00126 25-29 6.150000000000001E-4 30-34 0.052605 35-39 0.01285 40-44 0.001495 45-49 0.0 50-54 5.5E-4 55-59 9.999999999999999E-6 60-64 0.03146 65-69 0.03325 70-74 0.0 75-79 0.0 80-84 0.007770000000000001 85-89 0.024630000000000003 90-94 0.04723 95-99 0.009564999999999999 100-101 7.750000000000001E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.5458526197926608 #Duplication Level Relative count 1 100.0 2 0.5051215810054182 3 0.006533910998080036 4 0.002513042691569244 5 5.026085383138489E-4 6 5.026085383138489E-4 7 5.026085383138489E-4 8 5.026085383138489E-4 9 0.0030156512298830933 10++ 0.002513042691569244 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 420105 3.571137 3.9725976 95-97 AAAAA 414205 3.543419 3.8565867 80-84 >>END_MODULE