##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002003_Wally_GTTTCG_L002_R2_004.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 60 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.487379 34.0 31.0 34.0 31.0 34.0 2 32.660209 34.0 31.0 34.0 31.0 34.0 3 32.69530675 34.0 31.0 34.0 31.0 34.0 4 36.0573615 37.0 37.0 37.0 35.0 37.0 5 36.0699425 37.0 37.0 37.0 35.0 37.0 6 36.0619855 37.0 37.0 37.0 35.0 37.0 7 36.040506 37.0 37.0 37.0 35.0 37.0 8 36.02456825 37.0 37.0 37.0 35.0 37.0 9 37.76164625 39.0 38.0 39.0 35.0 39.0 10-14 38.0009649 39.4 38.2 39.4 35.2 39.4 15-19 39.11426135000001 41.0 39.0 41.0 36.0 41.0 20-24 38.93208625 41.0 39.0 41.0 35.4 41.0 25-29 38.512898899999996 40.2 38.2 41.0 34.8 41.0 30-34 37.8936255 40.0 37.2 41.0 33.4 41.0 35-39 36.92667014999999 38.8 35.2 40.8 32.4 41.0 40-44 36.024942249999995 37.0 35.0 40.0 31.2 41.0 45-49 35.13299920000001 35.2 35.0 39.2 30.8 41.0 50-54 33.8775038 35.0 33.4 36.8 28.6 39.8 55-59 34.03548454999999 35.0 35.0 35.4 30.4 39.4 60-64 33.63929460000001 35.0 34.4 35.0 30.0 37.8 65-69 33.298872599999996 35.0 34.0 35.0 29.6 36.2 70-74 32.97150755 35.0 34.0 35.0 29.0 35.4 75-79 32.6604272 35.0 33.0 35.0 28.2 35.0 80-84 32.36191315000001 35.0 33.0 35.0 27.0 35.0 85-89 32.04386555000001 35.0 33.0 35.0 27.0 35.0 90-94 31.660983150000003 35.0 33.0 35.0 24.6 35.0 95-99 31.12477505 35.0 33.0 35.0 23.6 35.0 100-101 30.048521625 34.0 31.0 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 13169.0 3 2422.0 4 2758.0 5 3036.0 6 3457.0 7 4237.0 8 4926.0 9 5266.0 10 5538.0 11 5567.0 12 5639.0 13 5412.0 14 5462.0 15 5565.0 16 5770.0 17 6413.0 18 7364.0 19 8179.0 20 9800.0 21 11503.0 22 13874.0 23 16752.0 24 20252.0 25 24756.0 26 29741.0 27 36188.0 28 43869.0 29 54386.0 30 67544.0 31 85005.0 32 112426.0 33 157519.0 34 257596.0 35 618442.0 36 1317639.0 37 763015.0 38 225352.0 39 33818.0 40 343.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 32.733622592326725 22.547939536346576 17.763581440351654 26.95485643097505 2 30.348295300455234 23.280439562199092 21.382923683059683 24.988341454285994 3 28.88050120628529 21.430826468030688 21.432202363738796 28.256469961945225 4 30.973245894028206 20.443006690027396 19.88527093310173 28.698476482842672 5 30.66697482367266 20.425381731992452 19.668546124250305 29.239097320084582 6 29.6223660014847 19.695485660202934 18.44271684778585 32.23943149052651 7 31.830103358526703 19.230299688693602 19.360310886117496 29.579286066662196 8 29.204530498493952 19.680960466481405 19.909832410789484 31.204676624235155 9 30.123241714258693 18.67765952096105 19.907874622806688 31.291224141973572 10-14 30.281300288960107 19.594923622182222 19.698088287323998 30.425687801533673 15-19 30.28588831185164 19.559525210789623 19.66672150957841 30.487864967780332 20-24 30.169405033216023 19.61168284154725 19.787768736656968 30.431143388579763 25-29 30.301723489075776 19.713882579251745 19.694498147001312 30.289895784671167 30-34 30.303237663740724 19.620114814715883 19.64494034818974 30.431707173353654 35-39 30.213351297203232 19.69420942776075 19.7444089680576 30.34803030697842 40-44 30.322869069392684 19.699976371957888 19.65139511712133 30.325759441528096 45-49 30.342361006166147 19.62324927212506 19.606246937704547 30.42814278400424 50-54 30.21646111943278 19.692019978872057 19.718401148108487 30.373117753586676 55-59 30.318912266507684 19.724433900558417 19.650779173295703 30.305874659638192 60-64 30.318 19.637535 19.629075 30.41539 65-69 30.21816342719457 19.702493735598374 19.73051385468388 30.348828982523173 70-74 30.31427 19.748095 19.666805 30.27083 75-79 30.343186613984013 19.660283473115175 19.648423175421705 30.348106737479107 80-84 30.23797980379827 19.727808499301567 19.725418380751687 30.30879331614848 85-89 30.325940000000003 19.766365 19.6664 30.241295 90-94 30.337195 19.664125 19.630705000000003 30.367975 95-99 30.26415316983804 19.749086989043867 19.712521550258604 30.27423829085949 100-101 30.49411397053079 19.785171643306924 19.584056000875012 30.13665838528727 >>END_MODULE >>Per base GC content pass #Base %GC 1 59.68847902330177 2 55.33663675474123 3 57.136971168230524 4 59.671722376870875 5 59.90607214375725 6 61.86179749201122 7 61.4093894251889 8 60.409207122729114 9 61.41446585623226 10-14 60.70698809049377 15-19 60.77375327963197 20-24 60.600548421795786 25-29 60.59161927374694 30-34 60.73494483709438 35-39 60.561381604181655 40-44 60.64862851092078 45-49 60.770503790170395 50-54 60.589578873019455 55-59 60.62478692614588 60-64 60.73339 65-69 60.56699240971775 70-74 60.585100000000004 75-79 60.69129335146313 80-84 60.54677311994675 85-89 60.567235 90-94 60.705169999999995 95-99 60.538391460697525 100-101 60.63077235581807 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 186.0 1 135.0 2 76.5 3 61.5 4 61.5 5 69.5 6 71.0 7 78.0 8 85.5 9 100.0 10 135.5 11 158.5 12 201.0 13 258.5 14 305.5 15 356.5 16 424.0 17 521.5 18 634.5 19 815.0 20 1005.0 21 1197.5 22 1437.0 23 1790.5 24 2212.5 25 2689.0 26 3246.0 27 3957.5 28 4822.0 29 5799.0 30 6994.0 31 8343.0 32 9985.0 33 11932.5 34 13762.5 35 15731.0 36 17888.5 37 20037.0 38 22065.0 39 24132.0 40 26281.0 41 28062.0 42 29856.5 43 31714.5 44 33645.0 45 35688.5 46 38036.0 47 40981.5 48 44348.5 49 48551.0 50 53709.0 51 59625.0 52 66972.5 53 75282.5 54 83434.0 55 92376.0 56 102576.5 57 113229.0 58 124200.5 59 135441.0 60 146615.5 61 157978.0 62 169070.0 63 178645.5 64 185711.0 65 189720.0 66 190561.5 67 187584.0 68 179917.5 69 168453.5 70 153647.0 71 136512.5 72 118269.0 73 98844.5 74 79819.5 75 62611.5 76 47502.5 77 34483.0 78 23959.0 79 15984.0 80 10068.5 81 5982.5 82 3446.5 83 1945.5 84 1161.0 85 798.0 86 579.0 87 434.0 88 368.5 89 299.5 90 253.0 91 224.0 92 184.0 93 152.5 94 133.0 95 113.5 96 85.5 97 73.0 98 56.0 99 37.0 100 27.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.08377499999999999 2 0.0733 3 0.0651 4 0.0602 5 0.050949999999999995 6 0.0474 7 0.0663 8 0.08605 9 0.092675 10-14 0.043295 15-19 0.047855 20-24 0.020385 25-29 0.022865 30-34 0.04243 35-39 0.028965 40-44 0.012875000000000001 45-49 0.013730000000000001 50-54 0.023385 55-59 0.019995000000000002 60-64 0.0 65-69 4.25E-4 70-74 0.0 75-79 0.00251 80-84 0.00496 85-89 0.0 90-94 0.0 95-99 0.0012000000000000001 100-101 0.0015625 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.5682158920539776 #Duplication Level Relative count 1 100.0 2 0.5076320722948487 3 0.006031272146077411 4 0.0010052120243462352 5 0.0010052120243462352 6 0.0010052120243462352 7 5.026060121731176E-4 8 0.0 9 0.0 10++ 0.004020848097384941 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 455340 3.902378 4.117926 65-69 TTTTT 444125 3.868047 4.2271194 95-97 >>END_MODULE