##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002003_Wally_GTTTCG_L002_R2_002.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 60 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.58061025 34.0 31.0 34.0 31.0 34.0 2 32.768438 34.0 31.0 34.0 31.0 34.0 3 32.77628875 34.0 31.0 34.0 31.0 34.0 4 36.15281 37.0 37.0 37.0 35.0 37.0 5 36.1548675 37.0 37.0 37.0 35.0 37.0 6 36.132018 37.0 37.0 37.0 35.0 37.0 7 36.12329225 37.0 37.0 37.0 35.0 37.0 8 36.10096875 37.0 37.0 37.0 35.0 37.0 9 37.86582475 39.0 39.0 39.0 37.0 39.0 10-14 38.15781979999999 39.4 39.2 39.4 35.8 39.4 15-19 39.314620000000005 41.0 40.0 41.0 36.8 41.0 20-24 39.116405900000004 41.0 39.2 41.0 35.8 41.0 25-29 38.7357698 40.4 38.6 41.0 35.0 41.0 30-34 38.08586205 40.0 37.4 41.0 34.0 41.0 35-39 37.15542725 39.0 35.2 41.0 33.0 41.0 40-44 36.22726485 37.0 35.0 40.0 32.0 41.0 45-49 35.37854125 35.2 35.0 39.4 31.2 41.0 50-54 34.14908815 35.0 33.8 37.0 29.6 39.8 55-59 34.292747799999994 35.0 35.0 35.4 31.0 39.6 60-64 33.88212875 35.0 35.0 35.0 31.0 37.8 65-69 33.51636995 35.0 34.4 35.0 30.4 36.2 70-74 33.209991650000006 35.0 34.0 35.0 29.8 35.4 75-79 32.9386822 35.0 34.0 35.0 29.0 35.0 80-84 32.637367700000006 35.0 33.0 35.0 29.0 35.0 85-89 32.332406500000005 35.0 33.0 35.0 27.0 35.0 90-94 31.9919545 35.0 33.0 35.0 27.0 35.0 95-99 31.4896231 35.0 33.0 35.0 24.6 35.0 100-101 30.421735875000003 34.0 31.5 35.0 21.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 12085.0 3 2235.0 4 2452.0 5 2563.0 6 2935.0 7 3474.0 8 4017.0 9 4225.0 10 4547.0 11 4629.0 12 4573.0 13 4463.0 14 4466.0 15 4701.0 16 5187.0 17 5734.0 18 6250.0 19 7205.0 20 8326.0 21 9967.0 22 11825.0 23 14587.0 24 17573.0 25 21255.0 26 25680.0 27 31945.0 28 39259.0 29 48370.0 30 60901.0 31 77910.0 32 103567.0 33 147312.0 34 243175.0 35 609318.0 36 1371385.0 37 801323.0 38 234111.0 39 36102.0 40 368.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 32.77099076479958 22.51187136116429 17.731254315777456 26.985883558258678 2 30.360172264460832 23.257428961180434 21.354201467536246 25.028197306822484 3 28.849150803647603 21.406585398022234 21.4440254682574 28.30023833007276 4 31.03264997153528 20.45085613117544 19.855161498182635 28.661332399106648 5 30.702070477305828 20.407339008753357 19.58470339173911 29.305887122201703 6 29.64520596271712 19.671873791140655 18.415749216753035 32.26717102938919 7 31.872223547944213 19.133415180320863 19.366461247922004 29.627900023812913 8 29.269122210339933 19.563396754715278 19.960479554806444 31.207001480138345 9 30.162525241193627 18.627700407064328 19.871956032244622 31.33781831949742 10-14 30.336106519833894 19.5495657970695 19.665642895688634 30.44868478740797 15-19 30.303173146985113 19.507439652079803 19.659909196827428 30.52947800410766 20-24 30.2161277022466 19.584703968349174 19.75584345991616 30.443324869488066 25-29 30.29732851755095 19.664315759976876 19.67541748151418 30.362938240957988 30-34 30.31538445215478 19.56012392409209 19.643036596683775 30.48145502706936 35-39 30.23011222513128 19.647175230011914 19.73158184887968 30.391130695977125 40-44 30.342438347092887 19.676758006900283 19.628817138472833 30.351986507533997 45-49 30.350145721278437 19.562329477693744 19.60069863783229 30.48682616319553 50-54 30.23435820877456 19.64716146651207 19.70661795706058 30.411862367652787 55-59 30.3144091565983 19.661599843528258 19.653676210542535 30.37031478933091 60-64 30.34268009034855 19.60415958537347 19.617974669645484 30.43518565463249 65-69 30.245381880341917 19.69094052095781 19.719140564667875 30.344537034032403 70-74 30.343905 19.716205000000002 19.628105 30.311785 75-79 30.340590683339506 19.62403196052857 19.607885885199956 30.427491470931965 80-84 30.25035613819627 19.69456852182908 19.721897412096613 30.333177927878037 85-89 30.351924017900707 19.720782225376055 19.655426107786443 30.271867648936794 90-94 30.375630547186482 19.6414570459409 19.594281788835747 30.388630618036867 95-99 30.28209926925159 19.7240663923239 19.69360812415172 30.30022621427279 100-101 30.466757485455513 19.75959982392973 19.565352461202096 30.20829022941266 >>END_MODULE >>Per base GC content pass #Base %GC 1 59.75687432305826 2 55.38836957128331 3 57.14938913372036 4 59.693982370641926 5 60.007957599507534 6 61.91237699210631 7 61.50012357175713 8 60.476123690478275 9 61.50034356069105 10-14 60.78479130724187 15-19 60.83265115109276 20-24 60.65945257173466 25-29 60.66026675850894 30-34 60.79683947922414 35-39 60.62124292110841 40-44 60.69442485462688 45-49 60.83697188447397 50-54 60.646220576427346 55-59 60.68472394592921 60-64 60.77786574498104 65-69 60.589918914374316 70-74 60.65568999999999 75-79 60.768082154271475 80-84 60.58353406607431 85-89 60.6237916668375 90-94 60.76426116522335 95-99 60.58232548352438 100-101 60.67504771486817 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 78.0 1 57.0 2 37.5 3 37.0 4 38.5 5 47.0 6 49.5 7 55.0 8 66.5 9 84.5 10 116.0 11 159.5 12 204.0 13 242.0 14 315.0 15 392.5 16 458.0 17 567.0 18 682.5 19 817.5 20 998.0 21 1235.0 22 1487.5 23 1754.0 24 2129.5 25 2630.0 26 3228.5 27 3943.0 28 4699.0 29 5713.0 30 6942.5 31 8242.5 32 9843.0 33 11689.0 34 13601.0 35 15650.0 36 17794.0 37 19871.5 38 21913.0 39 24029.0 40 25934.5 41 27727.5 42 29499.0 43 31482.5 44 33358.0 45 35035.0 46 37450.0 47 40589.5 48 44061.0 49 48248.5 50 53442.5 51 59858.5 52 66946.5 53 74628.5 54 83105.0 55 92397.5 56 102585.0 57 113123.5 58 124176.5 59 135115.0 60 146536.5 61 158539.5 62 169667.5 63 178967.0 64 186072.5 65 190586.0 66 190892.5 67 187756.5 68 180717.5 69 169184.5 70 154412.0 71 137041.5 72 118291.0 73 99094.5 74 80393.5 75 62759.5 76 47473.0 77 34824.0 78 24182.0 79 16036.0 80 10066.5 81 5859.5 82 3410.0 83 1938.5 84 1133.0 85 735.5 86 525.0 87 403.5 88 323.0 89 271.5 90 230.5 91 206.5 92 186.0 93 153.0 94 129.5 95 105.0 96 80.5 97 72.0 98 52.0 99 33.0 100 25.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.14835 2 0.101275 3 0.10702500000000001 4 0.095625 5 0.0955 6 0.151225 7 0.159225 8 0.17825 9 0.1632 10-14 0.109495 15-19 0.08168500000000001 20-24 0.049370000000000004 25-29 0.060545 30-34 0.09368 35-39 0.061155 40-44 0.033100000000000004 45-49 0.036905 50-54 0.036145 55-59 0.045849999999999995 60-64 6.1E-4 65-69 1.55E-4 70-74 0.0 75-79 0.006660000000000001 80-84 0.014235 85-89 0.00171 90-94 5.45E-4 95-99 0.01073 100-101 0.0115125 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.6260523725536302 #Duplication Level Relative count 1 100.0 2 0.5465332595907285 3 0.003519533410427875 4 0.001005580974407964 5 5.02790487203982E-4 6 0.0025139524360199106 7 5.02790487203982E-4 8 0.0 9 0.0 10++ 0.003519533410427875 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 435855 3.815708 4.0798016 85-89 AAAAA 434740 3.760186 4.019624 80-84 >>END_MODULE