##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002003_Wally_GTTTCG_L002_R1_005.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 124585 Filtered Sequences 0 Sequence length 101 %GC 60 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.434281815627884 34.0 31.0 34.0 31.0 34.0 2 32.71934020949553 34.0 31.0 34.0 31.0 34.0 3 32.777990929887224 34.0 31.0 34.0 31.0 34.0 4 36.262792471003735 37.0 37.0 37.0 35.0 37.0 5 36.10027691937232 37.0 35.0 37.0 35.0 37.0 6 36.1025645141871 37.0 36.0 37.0 35.0 37.0 7 36.07665449291648 37.0 36.0 37.0 35.0 37.0 8 36.100549825420394 37.0 36.0 37.0 35.0 37.0 9 37.82703375205683 39.0 38.0 39.0 35.0 39.0 10-14 38.082729060480794 39.4 38.2 39.4 35.2 39.4 15-19 39.118903559818605 40.4 38.8 41.0 35.8 41.0 20-24 38.9362202512341 40.0 38.4 41.0 35.0 41.0 25-29 38.421073162900825 40.0 38.0 41.0 33.8 41.0 30-34 37.75376971545531 39.8 36.6 41.0 33.0 41.0 35-39 36.57145723803026 38.4 35.0 40.2 31.0 41.0 40-44 35.313015210498854 36.4 34.6 39.8 28.6 41.0 45-49 35.151981378175535 35.0 34.8 39.0 30.8 41.0 50-54 33.65143476341454 35.0 33.4 36.8 26.0 40.2 55-59 33.46980936709876 35.0 33.0 35.0 27.6 39.0 60-64 33.27047236826264 35.0 33.0 35.0 27.6 37.2 65-69 32.87819560942329 35.0 33.0 35.0 27.8 35.8 70-74 32.599526427740095 35.0 33.0 35.0 27.2 35.0 75-79 31.851100854838062 34.4 32.4 35.0 26.2 35.0 80-84 32.077383312597824 35.0 33.0 35.0 27.0 35.0 85-89 31.771081590881728 35.0 33.0 35.0 25.6 35.0 90-94 31.310584741341252 34.6 32.2 35.0 24.2 35.0 95-99 30.763175342135895 34.0 31.6 35.0 22.8 35.0 100-101 29.204438736605532 33.5 29.0 34.5 10.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 1.0 3 1.0 4 4.0 5 6.0 6 9.0 7 27.0 8 81.0 9 120.0 10 170.0 11 185.0 12 190.0 13 195.0 14 233.0 15 215.0 16 243.0 17 257.0 18 261.0 19 289.0 20 314.0 21 371.0 22 458.0 23 559.0 24 711.0 25 936.0 26 1171.0 27 1410.0 28 1856.0 29 2285.0 30 2900.0 31 3568.0 32 4663.0 33 6482.0 34 10596.0 35 23089.0 36 38159.0 37 17514.0 38 4641.0 39 414.0 40 1.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 32.124822376185165 21.83749327638667 17.887621326097253 28.15006302133091 2 30.061403860817915 22.28839747963238 22.32371473291327 25.326483926636435 3 27.622105389894447 21.59810571096039 22.8606975157523 27.919091383392864 4 30.1320383673797 20.80105951759843 21.098848175944134 27.968053939077738 5 30.844804751775897 20.27932736685797 19.989565356985192 28.886302524380948 6 29.29245093711121 20.053778544768633 19.143556607938354 31.510213910181804 7 31.513424569570976 19.348236143998072 19.589035598185976 29.549303688244972 8 29.306898904362484 19.715856644058274 19.852309668098087 31.124934783481155 9 29.970702733073807 18.944495725809688 20.33551390616848 30.749287634948026 10-14 30.221294698398683 19.57234016936228 19.80382871132159 30.402536420917446 15-19 30.193522494682345 19.60284143355942 19.81281855761127 30.390817514146967 20-24 30.10096372273426 19.67644730990838 19.83425831236946 30.388330654987904 25-29 30.331678233104252 19.758782385623906 19.67626817439716 30.233271206874683 30-34 30.28262109177355 19.593616730783133 19.869732477733248 30.254029699710074 35-39 30.313000806107144 19.787200560099944 19.76295311411073 30.136845519682183 40-44 30.815015815417222 19.65382700984249 19.597630095855877 29.93352707888441 45-49 30.21262591804792 19.58165108159088 19.816350282939357 30.389372717421843 50-54 30.781394228839748 19.713127583577478 19.66352289601477 29.841955291568006 55-59 30.33671790343942 19.687923907372475 19.644098406710278 30.331259782477826 60-64 30.288897629578493 19.60249484254718 19.70684797354247 30.401759554331857 65-69 30.26955000080271 19.713914174252274 19.819711345502416 30.196824479442597 70-74 30.395633503230723 19.610707549062887 19.700927077898623 30.29273186980776 75-79 30.22883974796324 19.807681502588594 19.714732913272062 30.248745836176106 80-84 30.310711562387127 19.75759521611751 19.80800256852751 30.123690652967856 85-89 30.417305454107634 19.698198017417827 19.68294738531926 30.201549143155276 90-94 30.267363881713194 19.614872707948347 19.77381718815976 30.343946222178698 95-99 30.299634787494483 19.68519484689168 19.884255729020346 30.13091463659349 100-101 30.652967853272866 19.684954047437493 19.48549183288518 30.176586266404463 >>END_MODULE >>Per base GC content pass #Base %GC 1 60.27488539751607 2 55.387887787454346 3 55.54119677328732 4 58.10009230645744 5 59.731107276156834 6 60.80266484729301 7 61.06272825781595 8 60.431833687843636 9 60.71999036802184 10-14 60.62383111931613 15-19 60.584340008829315 20-24 60.48929437772216 25-29 60.564949439978946 30-34 60.536650791483616 35-39 60.44984632578932 40-44 60.748542894301636 45-49 60.601998635469755 50-54 60.62334952040776 55-59 60.66797768591724 60-64 60.69065718391036 65-69 60.466374480245314 70-74 60.688365373038486 75-79 60.477585584139334 80-84 60.43440221535498 85-89 60.61885459726292 90-94 60.61131010389189 95-99 60.43054942408798 100-101 60.82955411967733 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2.0 1 1.0 2 0.0 3 0.0 4 0.5 5 0.5 6 1.0 7 2.0 8 2.0 9 2.5 10 3.5 11 3.5 12 3.5 13 5.0 14 6.5 15 7.5 16 10.5 17 13.5 18 17.5 19 26.0 20 35.5 21 41.0 22 43.5 23 52.0 24 58.5 25 76.5 26 94.5 27 129.0 28 165.0 29 181.0 30 204.0 31 251.0 32 328.5 33 380.5 34 435.0 35 503.5 36 562.0 37 646.5 38 717.5 39 760.5 40 820.5 41 886.0 42 926.5 43 987.0 44 1061.5 45 1110.0 46 1161.5 47 1241.0 48 1347.0 49 1501.5 50 1657.5 51 1843.5 52 2095.5 53 2355.5 54 2665.5 55 2973.5 56 3248.5 57 3610.0 58 3931.5 59 4243.5 60 4565.0 61 4958.0 62 5368.0 63 5647.0 64 5841.5 65 5983.5 66 5965.0 67 5842.5 68 5667.5 69 5269.5 70 4727.5 71 4176.0 72 3649.0 73 3011.0 74 2383.5 75 1869.0 76 1408.5 77 993.5 78 694.0 79 491.5 80 300.5 81 154.0 82 80.0 83 36.5 84 19.0 85 15.0 86 13.0 87 7.0 88 3.5 89 3.5 90 1.0 91 0.0 92 0.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.019263956335032306 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.0044949231448408716 25-29 3.210659389172051E-4 30-34 0.057791869005096926 35-39 0.028735401533089858 40-44 0.018461291487739295 45-49 0.0 50-54 0.0 55-59 0.0 60-64 0.006421318778344102 65-69 0.00561865393105109 70-74 0.0 75-79 0.0 80-84 0.0 85-89 0.0 90-94 0.010595175984267768 95-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 124585.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.056186539310510895 #Duplication Level Relative count 1 100.0 2 0.025699714893787896 3 0.0 4 0.0 5 0.0 6 8.031160904308718E-4 7 0.0 8 0.0 9 0.0 10++ 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 13100 3.5793009 4.6374035 9 AAAAA 12675 3.5211494 4.5803146 95-97 >>END_MODULE